Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DQN58_RS02815 Genome accession   NZ_LS483443
Coordinates   557949..558680 (-) Length   243 a.a.
NCBI ID   WP_269148708.1    Uniprot ID   -
Organism   Aggregatibacter segnis ATCC 33393 strain NCTC 10977     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 552949..563680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN58_RS02800 (NCTC10977_00564) - 553875..555647 (-) 1773 WP_050540569.1 ShlB/FhaC/HecB family hemolysin secretion/activation protein -
  DQN58_RS02805 (NCTC10977_00565) envC 555894..557111 (+) 1218 WP_390879309.1 murein hydrolase activator EnvC -
  DQN58_RS02810 (NCTC10977_00566) - 557108..557935 (+) 828 WP_005715659.1 divergent polysaccharide deacetylase family protein -
  DQN58_RS02815 (NCTC10977_00567) comM 557949..558680 (-) 732 WP_269148708.1 ATP-binding protein Machinery gene
  DQN58_RS02820 (NCTC10977_00568) - 558787..559449 (+) 663 WP_005715662.1 heteromeric transposase endonuclease subunit TnsA -
  DQN58_RS02825 (NCTC10977_00569) - 559442..561361 (+) 1920 WP_005715664.1 Mu transposase C-terminal domain-containing protein -
  DQN58_RS02830 (NCTC10977_00570) - 561361..562254 (+) 894 WP_005715666.1 TniB family NTP-binding protein -
  DQN58_RS02835 (NCTC10977_00571) - 562212..563330 (+) 1119 WP_005715668.1 TniQ family protein -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27279.60 Da        Isoelectric Point: 9.6978

>NTDB_id=1141689 DQN58_RS02815 WP_269148708.1 557949..558680(-) (comM) [Aggregatibacter segnis ATCC 33393 strain NCTC 10977]
MLPCHVLSIMPLICNFDSGSIPKPGEISLAHNGVLFLDELPEFERKVLDALRQPLESGEIIISRANAKIQFPARFQLIAA
MNPSPTGHYQGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQNSGDRGESSAMVREKVLKTRAIQLQRAGK
INAHLTSKEIERDCKLEEKDALFLENALTKLGLSVRAYHRILKVSRTIADLEGEKQIHQRHLAEALGYRAMDRLLQKLSK
ASV

Nucleotide


Download         Length: 732 bp        

>NTDB_id=1141689 DQN58_RS02815 WP_269148708.1 557949..558680(-) (comM) [Aggregatibacter segnis ATCC 33393 strain NCTC 10977]
ATTCTACCGTGCCATGTATTATCAATCATGCCACTTATTTGTAACTTTGACAGCGGTTCGATTCCAAAACCCGGGGAAAT
CTCCCTAGCACACAATGGCGTGTTGTTTTTGGATGAACTGCCGGAATTCGAACGCAAGGTATTAGACGCGCTCCGCCAGC
CGTTAGAAAGCGGTGAAATCATCATTTCCCGCGCTAATGCCAAGATTCAATTTCCGGCAAGATTTCAGCTGATTGCCGCC
ATGAACCCAAGCCCCACAGGGCATTATCAAGGCACACATAACCGCACGTCACCACAACAAATCATGCGCTATTTAAATCG
TCTGTCCGGCCCCTTTTTAGATCGTTTCGATTTATCTATTGAAGTGCCGTTGTTGCCGCAAGGGAGTCTGCAAAATAGCG
GTGACCGTGGTGAATCCAGTGCAATGGTGAGAGAAAAAGTCTTAAAAACACGCGCTATTCAGCTTCAACGTGCCGGCAAA
ATTAACGCCCATTTAACCAGCAAAGAAATTGAACGGGATTGCAAACTAGAGGAAAAAGATGCGCTATTTTTAGAAAATGC
GCTGACCAAACTCGGACTGTCTGTACGGGCATACCACCGCATACTCAAGGTTTCCCGTACCATTGCGGATTTAGAAGGGG
AAAAGCAAATTCACCAGCGACACTTAGCAGAAGCTCTTGGCTATCGTGCGATGGATAGACTGTTACAGAAGCTCTCTAAA
GCATCTGTGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(4-127)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(137-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

85.232

97.531

0.831
  comM Glaesserella parasuis strain SC1401

80.498

99.177

0.798
  comM Vibrio cholerae strain A1552

65.56

99.177

0.65
  comM Vibrio campbellii strain DS40M4

64.315

99.177

0.638
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

51.867

99.177

0.514
  comM Legionella pneumophila str. Paris

50

94.65

0.473
  comM Legionella pneumophila strain ERS1305867

50

94.65

0.473

Multiple sequence alignment