Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DQN45_RS03990 Genome accession   NZ_LS483438
Coordinates   778623..779129 (-) Length   168 a.a.
NCBI ID   WP_042593471.1    Uniprot ID   A0A0D0HQS7
Organism   Haemophilus influenzae strain NCTC12975     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 773623..784129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN45_RS03955 (NCTC12975_00787) raiA 773856..774179 (-) 324 WP_012054908.1 ribosome-associated translation inhibitor RaiA -
  DQN45_RS03960 (NCTC12975_00788) bamC 774352..774999 (-) 648 WP_042593469.1 outer membrane protein assembly factor BamC -
  DQN45_RS03965 (NCTC12975_00789) dapA 775110..776006 (-) 897 WP_042593470.1 4-hydroxy-tetrahydrodipicolinate synthase -
  DQN45_RS03970 (NCTC12975_00790) bcp 776107..776574 (+) 468 WP_005668209.1 thioredoxin-dependent thiol peroxidase -
  DQN45_RS03975 (NCTC12975_00791) exbB 776742..777194 (+) 453 WP_005648856.1 TonB-system energizer ExbB -
  DQN45_RS03980 (NCTC12975_00792) exbD 777198..777641 (+) 444 WP_005648853.1 TonB system transport protein ExbD -
  DQN45_RS03985 (NCTC12975_00793) - 777651..778445 (+) 795 WP_005692201.1 energy transducer TonB -
  DQN45_RS03990 (NCTC12975_00794) ssb 778623..779129 (-) 507 WP_042593471.1 single-stranded DNA-binding protein Machinery gene
  DQN45_RS03995 (NCTC12975_00795) uvrA 779282..782113 (+) 2832 WP_042593472.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18753.50 Da        Isoelectric Point: 5.2649

>NTDB_id=1141565 DQN45_RS03990 WP_042593471.1 778623..779129(-) (ssb) [Haemophilus influenzae strain NCTC12975]
MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVMQMLGGRNQNASGSGNDMGGTPQSSYQARQTNNGNSYQSSRPAPQQSAPQAEPPMD
GFDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=1141565 DQN45_RS03990 WP_042593471.1 778623..779129(-) (ssb) [Haemophilus influenzae strain NCTC12975]
ATGGCTGGAATTAATAAAGTCATTATTGTAGGTCATTTAGGTAATGATCCTGAAATTCGTACTATGCCAAACGGCGATGC
CGTTGCAAATATCAGCGTAGCAACCAGTGAAAGCTGGAACGACCGTAATACTGGCGAACGCCGTGAAGTAACAGAATGGC
ACCGCATTGTATTCTATCGTCGTCAAGCAGAGATTTGCGGCGAATATTTACGCAAAGGCTCTCAAGTATATGTGGAAGGG
CGTTTAAAAACGCGTAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTAATGCAAAT
GCTTGGTGGACGTAATCAAAACGCAAGTGGTTCTGGTAATGATATGGGCGGTACGCCACAATCTTCTTACCAAGCTCGTC
AAACTAACAATGGTAATAGTTATCAATCATCTCGCCCAGCTCCACAACAATCTGCACCACAGGCTGAACCACCAATGGAT
GGATTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D0HQS7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

67.778

100

0.726
  ssb Vibrio cholerae strain A1552

55.495

100

0.601
  ssb Neisseria meningitidis MC58

50.289

100

0.518
  ssb Neisseria gonorrhoeae MS11

50.289

100

0.518
  ssb Latilactobacillus sakei subsp. sakei 23K

34.27

100

0.363
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.057

100

0.363

Multiple sequence alignment