Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   DQN28_RS02295 Genome accession   NZ_LS483430
Coordinates   418888..419598 (+) Length   236 a.a.
NCBI ID   WP_002985645.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12044     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 413888..424598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN28_RS02270 (NCTC12044_00443) - 413898..414611 (+) 714 WP_301182272.1 MIP/aquaporin family protein -
  DQN28_RS02275 (NCTC12044_00444) - 414746..415315 (+) 570 WP_063629690.1 hypothetical protein -
  DQN28_RS02280 (NCTC12044_00445) - 415284..416432 (+) 1149 WP_032464243.1 acetyl-CoA C-acyltransferase -
  DQN28_RS02285 (NCTC12044_00446) - 416389..417636 (+) 1248 WP_032464244.1 AMP-binding protein -
  DQN28_RS02290 (NCTC12044_00447) - 417692..418726 (+) 1035 WP_011284595.1 DUF3114 domain-containing protein -
  DQN28_RS02295 (NCTC12044_00448) vicR 418888..419598 (+) 711 WP_002985645.1 response regulator YycF Regulator
  DQN28_RS02300 (NCTC12044_00449) vicK 419591..420943 (+) 1353 WP_002985643.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DQN28_RS02305 (NCTC12044_00450) vicX 420947..421756 (+) 810 WP_002985641.1 MBL fold metallo-hydrolase Regulator
  DQN28_RS02310 (NCTC12044_00451) rnc 422199..422891 (+) 693 WP_002985639.1 ribonuclease III -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27083.99 Da        Isoelectric Point: 4.9038

>NTDB_id=1141262 DQN28_RS02295 WP_002985645.1 418888..419598(+) (vicR) [Streptococcus pyogenes strain NCTC12044]
MKKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLMLPELDGLEVAKEIRKTSHVPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTETIETAVAEENASSGTQELTIGNLQILPDAFVAKKHGQEVE
LTHREFELLHHLANHMGQVMTREHLLEIVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMKSYD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=1141262 DQN28_RS02295 WP_002985645.1 418888..419598(+) (vicR) [Streptococcus pyogenes strain NCTC12044]
ATGAAAAAAATACTTATTGTGGATGATGAAAAACCGATTTCTGACATTATTAAGTTTAATTTGACAAAAGAAGGTTATGA
CATTGTTACAGCTTTTGATGGACGCGAAGCGGTAACAATTTTTGAAGAAGAAAAGCCAGATTTAATTATTCTTGATTTGA
TGCTCCCTGAGTTGGACGGTCTTGAAGTAGCCAAGGAAATTCGTAAAACCAGTCATGTCCCGATTATTATGTTGTCGGCT
AAAGATAGTGAGTTTGACAAGGTTATTGGACTTGAAATTGGGGCTGATGATTACGTGACCAAGCCTTTTTCTAATCGGGA
ATTGCTGGCGCGTGTCAAGGCTCATCTGCGTCGTACCGAAACTATTGAAACGGCTGTTGCAGAAGAAAATGCTTCTTCAG
GTACACAGGAACTAACCATTGGTAATTTACAGATTTTACCAGATGCGTTTGTTGCTAAAAAACATGGTCAAGAGGTAGAG
TTGACCCATCGTGAATTTGAACTATTGCATCATCTAGCTAACCATATGGGTCAGGTGATGACACGAGAACACTTATTGGA
AATTGTTTGGGGATATGATTATTTTGGCGATGTGCGCACGGTTGATGTGACTGTTCGTCGTCTCCGTGAAAAAATTGAAG
ACACACCAAGTCGTCCTGAGTATATTTTAACAAGACGTGGTGTTGGGTACTACATGAAATCTTATGACTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

90.254

100

0.903
  micA Streptococcus pneumoniae Cp1015

79.06

99.153

0.784
  covR Streptococcus salivarius strain HSISS4

44.828

98.305

0.441
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.397

98.305

0.436
  scnR Streptococcus mutans UA159

36.91

98.729

0.364

Multiple sequence alignment