Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DQN28_RS02305 Genome accession   NZ_LS483430
Coordinates   420947..421756 (+) Length   269 a.a.
NCBI ID   WP_002985641.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12044     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 415947..426756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN28_RS02285 (NCTC12044_00446) - 416389..417636 (+) 1248 WP_032464244.1 AMP-binding protein -
  DQN28_RS02290 (NCTC12044_00447) - 417692..418726 (+) 1035 WP_011284595.1 DUF3114 domain-containing protein -
  DQN28_RS02295 (NCTC12044_00448) vicR 418888..419598 (+) 711 WP_002985645.1 response regulator YycF Regulator
  DQN28_RS02300 (NCTC12044_00449) vicK 419591..420943 (+) 1353 WP_002985643.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DQN28_RS02305 (NCTC12044_00450) vicX 420947..421756 (+) 810 WP_002985641.1 MBL fold metallo-hydrolase Regulator
  DQN28_RS02310 (NCTC12044_00451) rnc 422199..422891 (+) 693 WP_002985639.1 ribonuclease III -
  DQN28_RS02315 (NCTC12044_00452) smc 422892..426431 (+) 3540 WP_111686203.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30095.20 Da        Isoelectric Point: 5.5314

>NTDB_id=1141264 DQN28_RS02305 WP_002985641.1 420947..421756(+) (vicX) [Streptococcus pyogenes strain NCTC12044]
MNESGFKYSILASGSTGNCFYLETPKKRLLIDAGLTGKKITSLLAEIDRKPEDLDAILITHEHSDHIKGVGVMARKYHLD
IYANEKTWQLMDECNMLGKLDASQKHIFQRDKVLTFGDVDIESFGVSHDAIDPQFYRIMKDNKSFVMLTDTGYVSDRMTG
IIENADGYLIESNHDIEILRSGSYPWSLKQRILSDLGHLSNEDGAGAMIRSLGYNTKKIYLGHLSKENNIKELAHMTMVN
QLAMADLAVGTDFTVHDTSPDTACPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1141264 DQN28_RS02305 WP_002985641.1 420947..421756(+) (vicX) [Streptococcus pyogenes strain NCTC12044]
ATGAATGAGAGTGGTTTTAAATATAGTATTTTAGCATCTGGGTCCACAGGAAATTGTTTTTATTTAGAAACACCTAAAAA
ACGCTTATTGATTGATGCAGGGCTTACTGGTAAGAAAATTACCAGTCTTCTTGCTGAAATTGACCGCAAACCTGAGGATT
TGGATGCTATTTTGATTACCCATGAGCACTCTGATCATATTAAGGGTGTAGGCGTTATGGCCCGCAAATACCATTTGGAT
ATCTATGCTAATGAAAAAACATGGCAGCTGATGGATGAGTGCAATATGCTAGGTAAGCTTGATGCCTCACAAAAACATAT
TTTCCAAAGGGATAAAGTTTTGACCTTTGGAGATGTTGATATCGAAAGTTTTGGAGTCAGCCATGACGCTATTGATCCTC
AATTTTATCGGATTATGAAAGATAATAAGTCTTTTGTGATGTTGACAGATACAGGATATGTCAGTGATAGGATGACAGGT
ATTATTGAAAATGCAGATGGCTACTTGATTGAATCCAATCATGATATTGAAATTTTGAGATCAGGCTCTTATCCTTGGAG
CTTGAAGCAGCGTATTTTATCTGATTTAGGACATTTATCAAATGAAGATGGAGCGGGAGCCATGATTAGAAGCCTGGGGT
ACAATACCAAAAAAATATACCTAGGTCATCTGAGTAAAGAAAATAACATCAAAGAGTTAGCGCATATGACGATGGTCAAT
CAACTGGCTATGGCAGATTTAGCAGTAGGTACAGACTTTACGGTCCATGATACCTCTCCAGATACTGCTTGTCCATTAAC
TGATATTTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

75.836

100

0.758

Multiple sequence alignment