Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DQN52_RS03840 Genome accession   NZ_LS483426
Coordinates   703066..704568 (-) Length   500 a.a.
NCBI ID   WP_003785146.1    Uniprot ID   A0AAX2J295
Organism   Kingella kingae strain NCTC10529     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 698066..709568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN52_RS03810 (NCTC10529_00743) aphA 698470..699201 (+) 732 WP_003791412.1 acid phosphatase AphA -
  DQN52_RS03815 (NCTC10529_00744) - 699305..700000 (+) 696 WP_003785134.1 tol-pal system YbgF family protein -
  DQN52_RS03820 (NCTC10529_00745) - 699997..701097 (+) 1101 WP_003785136.1 hypothetical protein -
  DQN52_RS03825 (NCTC10529_00746) murU 701171..701872 (-) 702 WP_003785138.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  DQN52_RS03830 (NCTC10529_00747) - 701887..702219 (-) 333 WP_003785140.1 zinc ribbon domain-containing protein YjdM -
  DQN52_RS10920 - 702252..702425 (-) 174 WP_003785141.1 protein MIGRI -
  DQN52_RS03835 (NCTC10529_00748) - 702487..702951 (-) 465 WP_003785143.1 hypothetical protein -
  DQN52_RS03840 (NCTC10529_00749) comM 703066..704568 (-) 1503 WP_003785146.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DQN52_RS03845 (NCTC10529_00750) - 704579..704857 (-) 279 WP_003785148.1 accessory factor UbiK family protein -
  DQN52_RS03850 (NCTC10529_00751) - 705156..705734 (+) 579 WP_003785150.1 biliverdin-producing heme oxygenase -
  DQN52_RS11460 (NCTC10529_00752) - 705800..705928 (-) 129 WP_003785152.1 hypothetical protein -
  DQN52_RS03855 (NCTC10529_00753) - 706008..706841 (-) 834 Protein_720 adenosine deaminase -
  DQN52_RS03860 (NCTC10529_00754) - 707236..707979 (+) 744 WP_003785156.1 IS110 family transposase -
  DQN52_RS11570 (NCTC10529_00755) - 708082..708393 (+) 312 WP_032827573.1 transposase -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 54000.77 Da        Isoelectric Point: 7.5341

>NTDB_id=1141181 DQN52_RS03840 WP_003785146.1 703066..704568(-) (comM) [Kingella kingae strain NCTC10529]
MTFAVVNSRALNGMNAPLVEVEVHLANGLPQCNIVGLPDTEVKESRDRVRAAILQSGFEFPMQKITVNLAPADLPKESGR
FDLPIAIGILAASGQIIANDLERYEFAGELALSGNLRPIRGALAMAWQGQQAGRAFVLPSDNAIQAASMGQITAYGANSL
LEVAAHLNGTQSLAPSRLPDVPKQPAPDSLPDLRDVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLAQRLPSILPPL
TDDELTSVWALRSLLPQFTGSLQHDKRRPFRAPHHSASSAALVGGGSDPKPGEISLAHQGVLFLDELPEFDRRVLEMLRE
PLESGEIHISRATRQATYPAKFQLVAAMNPCPCGYLGHPSKPCRCTPDSVKRYRDRISGPLLDRIDLTIEVPTLSAAELV
SAQQGEDSATVLQRVLAARERQYARQSKINAALSSSELDQVAQIQSEAREALGQILEKLSLSARSFHRILRVARTLADLA
QDDEVNRAHIIRAVSFRRAV

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=1141181 DQN52_RS03840 WP_003785146.1 703066..704568(-) (comM) [Kingella kingae strain NCTC10529]
ATGACGTTTGCGGTGGTCAATAGTCGTGCGCTCAATGGTATGAACGCGCCTTTGGTGGAAGTGGAAGTGCATTTGGCAAA
CGGTTTGCCGCAATGCAACATTGTGGGTTTGCCCGACACCGAAGTCAAAGAAAGTCGCGACCGCGTGCGTGCGGCAATTT
TGCAAAGTGGCTTTGAGTTCCCCATGCAAAAAATCACGGTCAATCTTGCGCCTGCGGATTTGCCCAAGGAATCGGGGCGA
TTTGATTTGCCGATTGCGATTGGTATTTTGGCAGCCAGTGGGCAAATTATCGCCAACGATTTGGAGCGATACGAATTTGC
TGGCGAATTAGCGTTGTCGGGCAACTTGCGTCCGATTCGCGGTGCGTTGGCAATGGCGTGGCAGGGTCAGCAAGCAGGCA
GAGCGTTTGTGTTGCCCAGCGACAATGCGATTCAAGCCGCCAGCATGGGGCAAATCACGGCATACGGCGCGAACAGTTTG
TTGGAAGTGGCGGCGCATTTAAACGGCACACAAAGCCTTGCGCCCAGCCGTTTGCCCGATGTACCAAAGCAGCCTGCACC
CGATTCTTTGCCCGATTTGCGCGATGTGAAAGGACAGCACACGGCGCGATTGGCATTGGAAATTGCCGCAGCAGGCGGAC
ACAGTTTGTTGATGATGGGGCCACCAGGCACCGGCAAATCCATGCTCGCGCAACGTTTGCCGTCTATTTTGCCGCCTTTG
ACCGATGATGAATTGACCAGCGTCTGGGCGTTGCGCTCGCTGTTGCCGCAGTTCACAGGCAGCCTGCAACACGATAAACG
CCGACCGTTTCGTGCGCCACATCATTCGGCAAGTTCTGCTGCGTTGGTGGGTGGCGGTTCAGACCCGAAGCCCGGCGAAA
TTTCGTTGGCGCATCAAGGCGTGTTGTTTTTAGACGAATTGCCCGAATTTGACCGCCGTGTGTTGGAAATGTTGCGCGAA
CCGTTGGAAAGCGGCGAAATTCATATTTCTCGGGCGACGCGGCAGGCGACTTATCCAGCCAAATTTCAATTAGTGGCGGC
GATGAATCCTTGCCCATGCGGCTATTTGGGACACCCAAGCAAACCGTGTCGCTGCACGCCCGATAGCGTCAAACGATACC
GTGACCGTATTTCGGGCCCGCTGCTTGACCGCATTGATTTGACGATTGAAGTACCCACCCTATCGGCAGCGGAACTGGTT
AGCGCACAACAAGGCGAAGACAGCGCAACCGTGTTACAGCGCGTGTTGGCAGCGCGAGAACGCCAATATGCGCGACAAAG
CAAAATCAACGCGGCATTGTCGTCCAGCGAATTAGACCAAGTGGCGCAAATTCAATCCGAAGCGCGTGAAGCGTTGGGGC
AGATTTTGGAAAAATTGTCGCTGTCGGCGCGCAGTTTTCATCGCATTTTGCGTGTGGCACGGACGTTGGCGGATTTGGCG
CAAGACGATGAAGTTAATCGGGCGCACATTATTCGAGCAGTAAGTTTTCGCCGTGCTGTGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-398)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.507

99.8

0.534
  comM Vibrio campbellii strain DS40M4

51.406

99.6

0.512
  comM Haemophilus influenzae Rd KW20

49.505

100

0.5
  comM Glaesserella parasuis strain SC1401

49.2

100

0.492
  comM Legionella pneumophila str. Paris

47.515

100

0.478
  comM Legionella pneumophila strain ERS1305867

47.515

100

0.478
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44

100

0.44

Multiple sequence alignment