Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   DQN21_RS12505 Genome accession   NZ_LS483409
Coordinates   2491267..2492532 (+) Length   421 a.a.
NCBI ID   WP_077497985.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain NCTC13773     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2486267..2497532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN21_RS12480 (NCTC13773_02536) - 2487230..2489824 (+) 2595 WP_077497984.1 YfhO family protein -
  DQN21_RS12500 (NCTC13773_02540) rlmH 2490577..2491056 (-) 480 WP_009855220.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  DQN21_RS12505 (NCTC13773_02541) htrA 2491267..2492532 (+) 1266 WP_077497985.1 S1C family serine protease Regulator
  DQN21_RS12510 (NCTC13773_02542) spo0J 2492602..2493378 (+) 777 WP_074658518.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 421 a.a.        Molecular weight: 43818.56 Da        Isoelectric Point: 4.0575

>NTDB_id=1140596 DQN21_RS12505 WP_077497985.1 2491267..2492532(+) (htrA) [Streptococcus gallolyticus strain NCTC13773]
MKKIKLPNLPKLPKFNYKNWLKPLGVILVGFIAGIAGTILVLNMAGISITNVSGSSTKTTTSSVSYSNSNDTTKAVEKVQ
DAVVSVINYKSDSSSSTSDLYNQMFGNDSDSSSDSSSTDDLTVYSEGSGVIYKKDGDSAYVVTNNHVIDGAEQIEIMLAD
GTKVVGELVGADTYSDIAVVKISSDNVSTVAEFADSDKLTVGETAIAIGSPLGTEYANSVTQGIVSSLSRTVTMTNDDGE
TISTNAIQTDAAINPGNSGGALINIEGQVIGINSSKISSTSSSGESVEGMGFAIPSNDVVSIINQLEENGQVIRPALGIS
MVNLSDLSTNAIAQLNIPTSVTSGVVVAAVQSGMPAEGNLEQYDVITAIDDQEVTSTSDLQSILYTHSVGDSVKVTFYRG
TDKKTATIELTKTTQDLSSSN

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=1140596 DQN21_RS12505 WP_077497985.1 2491267..2492532(+) (htrA) [Streptococcus gallolyticus strain NCTC13773]
GTGAAAAAAATAAAATTACCAAATTTACCCAAGTTGCCAAAATTTAATTACAAAAATTGGTTAAAACCATTGGGTGTCAT
TTTAGTCGGCTTTATAGCTGGTATCGCAGGTACAATACTCGTCCTAAATATGGCAGGTATTTCAATCACTAACGTCAGTG
GTTCAAGTACAAAAACAACAACAAGTAGCGTAAGCTATTCTAACTCTAACGATACAACAAAAGCTGTGGAAAAAGTTCAA
GACGCAGTTGTATCTGTTATTAACTACAAATCAGACTCGTCGTCTTCTACAAGTGACCTCTACAATCAAATGTTTGGCAA
TGATTCAGACAGTAGTAGCGATTCAAGCTCTACAGATGATTTGACTGTTTACAGTGAAGGTTCTGGGGTTATTTACAAAA
AAGATGGTGATTCTGCTTATGTCGTCACTAACAATCACGTTATTGATGGGGCCGAACAAATTGAAATCATGCTTGCTGAT
GGAACAAAAGTTGTTGGTGAGCTAGTCGGAGCAGATACTTATTCAGATATTGCCGTTGTCAAAATTTCTTCTGACAACGT
ATCTACAGTTGCTGAATTTGCCGATTCTGATAAATTGACTGTCGGTGAAACTGCTATCGCTATTGGTAGCCCACTTGGTA
CTGAATATGCTAACTCTGTAACACAAGGTATTGTCTCAAGTCTTAGCCGTACAGTAACCATGACAAATGATGATGGTGAA
ACTATCTCAACAAATGCTATCCAAACGGATGCAGCGATTAACCCAGGTAACTCTGGTGGTGCTTTAATTAACATTGAAGG
ACAAGTTATCGGTATCAATTCAAGTAAGATTTCATCTACATCAAGTTCTGGTGAATCTGTCGAAGGTATGGGATTTGCCA
TTCCATCTAACGATGTTGTATCCATTATTAACCAATTGGAAGAAAATGGGCAAGTTATCCGTCCAGCACTTGGTATTTCA
ATGGTAAACTTGAGCGACCTTTCAACAAATGCAATTGCTCAACTTAACATTCCAACAAGTGTAACAAGCGGTGTCGTTGT
GGCGGCTGTTCAATCTGGTATGCCAGCTGAAGGTAATCTCGAACAATATGATGTCATCACAGCTATTGACGACCAAGAAG
TAACATCTACTTCAGATCTTCAAAGTATCCTTTATACTCATTCTGTTGGTGACTCTGTCAAAGTAACCTTCTACCGTGGA
ACTGATAAGAAAACAGCCACAATTGAATTAACTAAGACAACACAAGATTTATCTTCCTCAAACTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

64.444

96.2

0.62

  htrA Streptococcus gordonii str. Challis substr. CH1

59.804

96.912

0.58

  htrA Streptococcus pneumoniae D39

57.908

97.625

0.565

  htrA Streptococcus pneumoniae TIGR4

57.908

97.625

0.565

  htrA Streptococcus mitis NCTC 12261

57.908

97.625

0.565

  htrA Streptococcus pneumoniae R6

57.908

97.625

0.565

  htrA Streptococcus pneumoniae Rx1

57.908

97.625

0.565


Multiple sequence alignment