Detailed information NTG1140538

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: DQN21_RS00670
• Genome accession: NZ_LS483409
• Coordinates: 98182..98649 (+)
• Length: 155 a.a.
• NCBI ID: WP_012961330.1
• Uniprot ID: A0AA94M0F9
• Organism: Streptococcus gallolyticus strain NCTC13773
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 93182..103649

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQN21_RS00640 (NCTC13773_00128)	-	94926..95294 (+)	369	WP_074658936.1	DUF1033 family protein	-
DQN21_RS00645 (NCTC13773_00129)	comYA	95365..96306 (+)	942	WP_077495921.1	competence type IV pilus ATPase ComGA	Machinery gene
DQN21_RS00650 (NCTC13773_00130)	comYB	96188..97273 (+)	1086	WP_231873059.1	competence type IV pilus assembly protein ComGB	Machinery gene
DQN21_RS00655 (NCTC13773_00131)	comYC	97273..97566 (+)	294	WP_039695588.1	competence type IV pilus major pilin ComGC	Machinery gene
DQN21_RS00660 (NCTC13773_00132)	comYD	97550..97981 (+)	432	WP_009853232.1	competence type IV pilus minor pilin ComGD	Machinery gene
DQN21_RS00665 (NCTC13773_00133)	comGE	97935..98228 (+)	294	WP_012961329.1	competence type IV pilus minor pilin ComGE	-
DQN21_RS00670 (NCTC13773_00134)	comYF	98182..98649 (+)	468	WP_012961330.1	competence type IV pilus minor pilin ComGF	Machinery gene
DQN21_RS00675 (NCTC13773_00135)	comGG	98603..98953 (+)	351	WP_420031090.1	competence type IV pilus minor pilin ComGG	-
DQN21_RS00680 (NCTC13773_00136)	comYH	99008..99964 (+)	957	WP_009853236.1	class I SAM-dependent methyltransferase	Machinery gene
DQN21_RS00685 (NCTC13773_00137)	-	100017..101216 (+)	1200	WP_061458770.1	acetate kinase	-
DQN21_RS00690 (NCTC13773_00138)	-	101378..101578 (+)	201	WP_012961332.1	helix-turn-helix transcriptional regulator	-
DQN21_RS00700 (NCTC13773_00139)	-	101810..102262 (+)	453	WP_061458772.1	hypothetical protein	-
DQN21_RS00705 (NCTC13773_00140)	-	102274..102909 (+)	636	WP_077495927.1	CPBP family intramembrane glutamic endopeptidase	-

Sequence

Protein

• Length: 155 a.a.
• Molecular weight: 17515.10 Da
• Isoelectric Point: 9.7290

>NTDB_id=1140538 DQN21_RS00670 WP_012961330.1 98182..98649(+) (comYF) [Streptococcus gallolyticus strain NCTC13773]
MFMRGKRKYYTLKKTSLKAFTLIECLVSLLVISGAILVYNALTQSISANVHYLSENQEENWLLFSQQLRAELANCQLDKV
ENNKLYVTKSSQKLAFGQSKADDFRKTNASGQGYQPMIFGVKSSAISRDGQKVTMTLNLENGLERTFVYTFETAS

Nucleotide

• Length: 468 bp

>NTDB_id=1140538 DQN21_RS00670 WP_012961330.1 98182..98649(+) (comYF) [Streptococcus gallolyticus strain NCTC13773]
ATGTTTATGAGGGGAAAACGGAAATATTACACGTTAAAAAAGACTAGTTTAAAGGCATTCACCCTCATAGAATGTTTGGT
TTCTTTATTGGTAATTTCGGGTGCTATTCTTGTTTACAATGCCTTAACGCAATCTATTTCTGCAAATGTGCATTATTTGT
CGGAAAATCAAGAGGAAAACTGGCTTTTGTTTTCACAACAGCTGCGTGCGGAGCTTGCCAATTGTCAATTAGATAAGGTT
GAAAATAACAAGCTATATGTGACGAAGTCCAGTCAAAAGTTGGCATTTGGACAGTCAAAGGCTGATGATTTTCGTAAAAC
AAACGCATCTGGTCAAGGTTATCAGCCAATGATATTTGGAGTAAAATCTTCTGCTATTTCTAGAGATGGTCAGAAGGTGA
CAATGACATTGAATTTAGAGAATGGTTTGGAGAGGACATTTGTTTACACTTTTGAAACGGCAAGTTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (51-144)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	57.554	89.677	0.516
comYF	Streptococcus mutans UA159	56.835	89.677	0.51
comGF/cglF	Streptococcus pneumoniae Rx1	46.429	90.323	0.419
comGF/cglF	Streptococcus pneumoniae D39	46.429	90.323	0.419
comGF/cglF	Streptococcus pneumoniae R6	46.429	90.323	0.419
comGF/cglF	Streptococcus pneumoniae TIGR4	46.429	90.323	0.419
comGF/cglF	Streptococcus mitis NCTC 12261	45.07	91.613	0.413
comGF/cglF	Streptococcus mitis SK321	44.366	91.613	0.406
comGF	Lactococcus lactis subsp. cremoris KW2	43.478	89.032	0.387