Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | DQN21_RS00680 | Genome accession | NZ_LS483409 |
| Coordinates | 99008..99964 (+) | Length | 318 a.a. |
| NCBI ID | WP_009853236.1 | Uniprot ID | A0A139R3Z2 |
| Organism | Streptococcus gallolyticus strain NCTC13773 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 94008..104964
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQN21_RS00640 (NCTC13773_00128) | - | 94926..95294 (+) | 369 | WP_074658936.1 | DUF1033 family protein | - |
| DQN21_RS00645 (NCTC13773_00129) | comYA | 95365..96306 (+) | 942 | WP_077495921.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| DQN21_RS00650 (NCTC13773_00130) | comYB | 96188..97273 (+) | 1086 | WP_231873059.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| DQN21_RS00655 (NCTC13773_00131) | comYC | 97273..97566 (+) | 294 | WP_039695588.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| DQN21_RS00660 (NCTC13773_00132) | comYD | 97550..97981 (+) | 432 | WP_009853232.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| DQN21_RS00665 (NCTC13773_00133) | comGE | 97935..98228 (+) | 294 | WP_012961329.1 | competence type IV pilus minor pilin ComGE | - |
| DQN21_RS00670 (NCTC13773_00134) | comYF | 98182..98649 (+) | 468 | WP_012961330.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| DQN21_RS00675 (NCTC13773_00135) | comGG | 98603..98953 (+) | 351 | WP_420031090.1 | competence type IV pilus minor pilin ComGG | - |
| DQN21_RS00680 (NCTC13773_00136) | comYH | 99008..99964 (+) | 957 | WP_009853236.1 | class I SAM-dependent methyltransferase | Machinery gene |
| DQN21_RS00685 (NCTC13773_00137) | - | 100017..101216 (+) | 1200 | WP_061458770.1 | acetate kinase | - |
| DQN21_RS00690 (NCTC13773_00138) | - | 101378..101578 (+) | 201 | WP_012961332.1 | helix-turn-helix transcriptional regulator | - |
| DQN21_RS00700 (NCTC13773_00139) | - | 101810..102262 (+) | 453 | WP_061458772.1 | hypothetical protein | - |
| DQN21_RS00705 (NCTC13773_00140) | - | 102274..102909 (+) | 636 | WP_077495927.1 | CPBP family intramembrane glutamic endopeptidase | - |
| DQN21_RS00710 (NCTC13773_00141) | comR | 103088..103990 (+) | 903 | WP_077495929.1 | helix-turn-helix domain-containing protein | Regulator |
Sequence
Protein
Download Length: 318 a.a. Molecular weight: 36027.96 Da Isoelectric Point: 4.4127
>NTDB_id=1140539 DQN21_RS00680 WP_009853236.1 99008..99964(+) (comYH) [Streptococcus gallolyticus strain NCTC13773]
MNFEKIETAYELILENIQLIENELKTHIYDALIEQNSFYLGAEGASEEVAANNEKLRQLALTKEEWRRAFQFIFIKAGQT
EQLQANHQFTPDAIGFILLFLIENLTDSDKIDLLEIGSGTGNLAQTLLNNSSKELNYLGIEVDDLLIDLSASIAEVMDSD
AQFIQEDAVRPQILKESDVIISDLPVGFYPNDDIAKRYKVASSDEHTYAHHLLMEQSLKYLKKDGIAVFLAPVSLLTSKQ
SDLLKQWLKDYADIIAVITLPESIFGNAANAKSIFVLKKQAAHTPETFVYPLSDLQSREALTDFIRKFQKWKVDNMNF
MNFEKIETAYELILENIQLIENELKTHIYDALIEQNSFYLGAEGASEEVAANNEKLRQLALTKEEWRRAFQFIFIKAGQT
EQLQANHQFTPDAIGFILLFLIENLTDSDKIDLLEIGSGTGNLAQTLLNNSSKELNYLGIEVDDLLIDLSASIAEVMDSD
AQFIQEDAVRPQILKESDVIISDLPVGFYPNDDIAKRYKVASSDEHTYAHHLLMEQSLKYLKKDGIAVFLAPVSLLTSKQ
SDLLKQWLKDYADIIAVITLPESIFGNAANAKSIFVLKKQAAHTPETFVYPLSDLQSREALTDFIRKFQKWKVDNMNF
Nucleotide
Download Length: 957 bp
>NTDB_id=1140539 DQN21_RS00680 WP_009853236.1 99008..99964(+) (comYH) [Streptococcus gallolyticus strain NCTC13773]
ATGAATTTTGAAAAAATTGAAACAGCCTATGAGCTGATTTTAGAAAATATCCAATTAATTGAAAATGAGTTAAAAACTCA
TATTTATGATGCGCTTATTGAACAGAATTCTTTTTACTTGGGGGCTGAAGGTGCCAGTGAAGAAGTTGCTGCCAACAATG
AGAAACTGCGTCAGCTTGCATTGACCAAAGAAGAGTGGCGTCGAGCTTTCCAATTTATCTTTATCAAAGCTGGTCAAACA
GAGCAGCTGCAAGCCAATCATCAATTTACACCAGATGCTATTGGTTTTATTTTGCTGTTCTTGATTGAAAATCTGACAGA
TTCAGATAAAATTGATCTTTTAGAAATTGGTAGTGGGACAGGAAACCTTGCTCAAACATTGTTAAATAATTCGTCTAAAG
AATTAAATTATCTTGGTATTGAAGTTGACGATTTGTTGATTGATTTATCAGCCAGTATTGCAGAAGTGATGGATTCTGAT
GCTCAGTTTATTCAAGAAGATGCTGTACGTCCACAAATTCTGAAAGAAAGTGATGTGATTATTAGTGATTTGCCAGTTGG
TTTTTATCCTAATGATGACATTGCCAAACGTTATAAAGTGGCAAGTTCTGATGAGCATACCTATGCCCATCATTTGTTAA
TGGAACAATCGTTAAAATATCTCAAAAAAGATGGTATTGCAGTCTTTTTGGCGCCTGTCAGTCTTTTGACAAGTAAGCAA
AGTGATTTATTGAAACAATGGTTGAAAGATTACGCGGATATTATCGCCGTGATTACCTTGCCAGAATCTATTTTTGGTAA
TGCAGCGAATGCAAAATCAATTTTTGTTTTGAAAAAACAGGCTGCGCATACGCCAGAAACCTTTGTTTATCCACTTTCTG
ACTTACAAAGTCGTGAAGCTCTGACTGATTTCATTAGAAAATTTCAAAAATGGAAAGTTGATAATATGAATTTTTAA
ATGAATTTTGAAAAAATTGAAACAGCCTATGAGCTGATTTTAGAAAATATCCAATTAATTGAAAATGAGTTAAAAACTCA
TATTTATGATGCGCTTATTGAACAGAATTCTTTTTACTTGGGGGCTGAAGGTGCCAGTGAAGAAGTTGCTGCCAACAATG
AGAAACTGCGTCAGCTTGCATTGACCAAAGAAGAGTGGCGTCGAGCTTTCCAATTTATCTTTATCAAAGCTGGTCAAACA
GAGCAGCTGCAAGCCAATCATCAATTTACACCAGATGCTATTGGTTTTATTTTGCTGTTCTTGATTGAAAATCTGACAGA
TTCAGATAAAATTGATCTTTTAGAAATTGGTAGTGGGACAGGAAACCTTGCTCAAACATTGTTAAATAATTCGTCTAAAG
AATTAAATTATCTTGGTATTGAAGTTGACGATTTGTTGATTGATTTATCAGCCAGTATTGCAGAAGTGATGGATTCTGAT
GCTCAGTTTATTCAAGAAGATGCTGTACGTCCACAAATTCTGAAAGAAAGTGATGTGATTATTAGTGATTTGCCAGTTGG
TTTTTATCCTAATGATGACATTGCCAAACGTTATAAAGTGGCAAGTTCTGATGAGCATACCTATGCCCATCATTTGTTAA
TGGAACAATCGTTAAAATATCTCAAAAAAGATGGTATTGCAGTCTTTTTGGCGCCTGTCAGTCTTTTGACAAGTAAGCAA
AGTGATTTATTGAAACAATGGTTGAAAGATTACGCGGATATTATCGCCGTGATTACCTTGCCAGAATCTATTTTTGGTAA
TGCAGCGAATGCAAAATCAATTTTTGTTTTGAAAAAACAGGCTGCGCATACGCCAGAAACCTTTGTTTATCCACTTTCTG
ACTTACAAAGTCGTGAAGCTCTGACTGATTTCATTAGAAAATTTCAAAAATGGAAAGTTGATAATATGAATTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
68.987 |
99.371 |
0.686 |
| comYH | Streptococcus mutans UA159 |
68.671 |
99.371 |
0.682 |