Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   DQN33_RS04795 Genome accession   NZ_LS483408
Coordinates   943968..944813 (-) Length   281 a.a.
NCBI ID   WP_111673220.1    Uniprot ID   -
Organism   Streptococcus uberis strain NCTC4674     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 938968..949813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN33_RS04775 (NCTC4674_00986) - 939248..939961 (-) 714 WP_012658421.1 DUF3307 domain-containing protein -
  DQN33_RS04780 (NCTC4674_00987) - 939954..940628 (-) 675 WP_012658422.1 SatD family protein -
  DQN33_RS04785 (NCTC4674_00988) - 940813..941697 (+) 885 WP_111673218.1 LysR family transcriptional regulator -
  DQN33_RS04790 (NCTC4674_00989) topA 941731..943863 (-) 2133 WP_111673219.1 type I DNA topoisomerase -
  DQN33_RS04795 (NCTC4674_00990) dprA 943968..944813 (-) 846 WP_111673220.1 DNA-processing protein DprA Machinery gene
  DQN33_RS04800 (NCTC4674_00991) - 944871..945416 (-) 546 WP_012658426.1 sugar O-acetyltransferase -
  DQN33_RS04805 (NCTC4674_00992) - 945447..946220 (-) 774 WP_046389352.1 ribonuclease HII -
  DQN33_RS04810 (NCTC4674_00993) ylqF 946204..947058 (-) 855 WP_111673221.1 ribosome biogenesis GTPase YlqF -
  DQN33_RS04815 (NCTC4674_00994) - 947230..947667 (+) 438 WP_046391290.1 DUF1836 domain-containing protein -
  DQN33_RS04820 (NCTC4674_00995) trhA 947669..948319 (+) 651 WP_111673222.1 PAQR family membrane homeostasis protein TrhA -
  DQN33_RS04825 (NCTC4674_00996) - 948403..949305 (+) 903 WP_046389354.1 diacylglycerol/lipid kinase family protein -
  DQN33_RS04830 (NCTC4674_00997) - 949352..949699 (-) 348 WP_100912041.1 hypothetical protein -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 31318.24 Da        Isoelectric Point: 9.2132

>NTDB_id=1140509 DQN33_RS04795 WP_111673220.1 943968..944813(-) (dprA) [Streptococcus uberis strain NCTC4674]
MNNFDIFKLKCAGLKNHHILNIIAYMKHSTQSLSLSLRNMAVVSKCSDPITFIENYKALKSKELRKIFMEYPSISILDKE
YPALLKEIHNPPVLFFYQGNIKLLDSPKLAIVGSRKASETGIKSVQKIVEELNNKYVIVSGLARGIDTAAHLSSLRNGGQ
TIAIIGSGFNNIYPKENHRLQDYIGQHHLLISEYAPNDKPYSFHFPERNRIIAGLVKAVLVVEAKKRSGSLITCQHALDE
GRDVYAIPGNIIDGFSDGCNLLIQEGAKCVTNGFQISSELF

Nucleotide


Download         Length: 846 bp        

>NTDB_id=1140509 DQN33_RS04795 WP_111673220.1 943968..944813(-) (dprA) [Streptococcus uberis strain NCTC4674]
ATGAATAATTTTGACATTTTTAAACTTAAGTGTGCCGGACTAAAAAATCATCACATTCTGAATATCATCGCCTACATGAA
ACACTCTACACAATCACTTTCTTTATCTTTACGAAATATGGCTGTTGTATCCAAATGTAGTGATCCCATTACATTCATAG
AGAACTATAAAGCATTAAAAAGTAAGGAACTTAGAAAAATTTTCATGGAATATCCTTCCATTTCTATTCTAGATAAGGAA
TACCCAGCTCTATTAAAAGAAATTCATAATCCACCAGTTTTATTCTTCTACCAAGGAAATATCAAACTACTAGATTCACC
TAAACTAGCTATTGTTGGGTCTAGAAAGGCTTCCGAAACAGGAATAAAAAGTGTCCAAAAAATTGTTGAAGAATTAAATA
ATAAATATGTTATTGTCAGTGGACTTGCTAGAGGCATCGACACAGCCGCTCACCTCAGTAGTTTAAGAAATGGTGGTCAA
ACAATTGCAATTATTGGTTCTGGTTTTAATAACATATATCCTAAAGAAAATCACCGCTTACAAGATTATATTGGTCAACA
TCATCTCCTTATATCAGAATATGCCCCTAATGATAAGCCATATTCCTTTCACTTTCCTGAACGAAATCGTATTATTGCAG
GTCTCGTAAAAGCAGTATTAGTAGTTGAAGCAAAAAAACGCTCTGGAAGTTTGATAACCTGTCAACATGCATTGGATGAA
GGACGTGACGTTTATGCTATTCCAGGAAATATTATCGATGGATTTTCTGATGGTTGTAATTTATTGATTCAAGAAGGCGC
AAAGTGCGTGACCAATGGCTTTCAAATCAGTTCTGAACTTTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-271)

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-64)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

62.5

99.644

0.623
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

55

99.644

0.548
  dprA/cilB/dalA Streptococcus pneumoniae D39

55

99.644

0.548
  dprA/cilB/dalA Streptococcus pneumoniae R6

55

99.644

0.548
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

55

99.644

0.548
  dprA/cilB/dalA Streptococcus mitis SK321

55

99.644

0.548
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

54.643

99.644

0.544
  dprA Lactococcus lactis subsp. cremoris KW2

54.122

99.288

0.537
  dprA Vibrio campbellii strain DS40M4

35.836

100

0.374

Multiple sequence alignment