Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   DQM45_RS07875 Genome accession   NZ_LS483388
Coordinates   1578849..1579397 (-) Length   182 a.a.
NCBI ID   WP_003084656.1    Uniprot ID   A0A4V0HCP2
Organism   Streptococcus porcinus strain NCTC10999     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1573849..1584397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM45_RS07840 (NCTC10999_01596) - 1574178..1574918 (-) 741 WP_003084242.1 class I SAM-dependent methyltransferase -
  DQM45_RS07845 (NCTC10999_01597) rsfS 1574977..1575330 (-) 354 WP_003085350.1 ribosome silencing factor -
  DQM45_RS07850 (NCTC10999_01598) yqeK 1575445..1576038 (-) 594 WP_003082685.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  DQM45_RS07855 (NCTC10999_01599) - 1576035..1576667 (-) 633 WP_003084589.1 nicotinate-nucleotide adenylyltransferase -
  DQM45_RS07860 (NCTC10999_01600) yhbY 1576735..1577043 (-) 309 WP_003083880.1 ribosome assembly RNA-binding protein YhbY -
  DQM45_RS07865 (NCTC10999_01601) yqeH 1577103..1578218 (-) 1116 WP_003085998.1 ribosome biogenesis GTPase YqeH -
  DQM45_RS07870 (NCTC10999_01602) - 1578218..1578745 (-) 528 WP_003086046.1 YqeG family HAD IIIA-type phosphatase -
  DQM45_RS07875 (NCTC10999_01603) comX/sigX/comX2/sigX2 1578849..1579397 (-) 549 WP_003084656.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 22082.82 Da        Isoelectric Point: 10.2387

>NTDB_id=1139808 DQM45_RS07875 WP_003084656.1 1578849..1579397(-) (comX/sigX/comX2/sigX2) [Streptococcus porcinus strain NCTC10999]
MFFFVTFFYNMTIILKEGVTKKSMYNIELNELFSHVKPIIFKLMRSYFIQLWETDDWLQEGRLVLYNLIESNPELRNNQK
KLFVYFKTKFSSHIKDTIRHQESFKRKLNRLPYQEISEVSHRIPEKGLVLDDFVAYQSIIEELKPYLTTKEKSQFKALLR
GERFSGRKSLLRKLKPFFIDFQ

Nucleotide


Download         Length: 549 bp        

>NTDB_id=1139808 DQM45_RS07875 WP_003084656.1 1578849..1579397(-) (comX/sigX/comX2/sigX2) [Streptococcus porcinus strain NCTC10999]
ATGTTCTTTTTTGTAACTTTCTTTTACAATATGACTATTATTTTGAAAGAAGGTGTTACTAAAAAGTCTATGTATAATAT
TGAATTAAATGAATTATTTAGCCATGTAAAGCCAATTATTTTTAAGTTAATGCGGAGCTACTTTATTCAACTATGGGAAA
CTGATGATTGGCTACAAGAGGGACGTCTAGTTCTATATAATCTTATTGAAAGTAATCCTGAGTTAAGAAACAATCAAAAA
AAGTTATTTGTATATTTTAAAACTAAATTTTCATCCCACATAAAAGATACCATTCGTCACCAGGAATCATTCAAACGAAA
ATTGAATCGCTTACCATATCAAGAAATTAGTGAAGTTTCCCATCGGATACCTGAAAAGGGTCTTGTCCTTGATGATTTTG
TTGCTTATCAGTCAATTATTGAAGAATTGAAGCCGTATTTAACTACCAAAGAAAAAAGTCAATTTAAAGCATTGTTAAGA
GGAGAGCGCTTTTCTGGGCGAAAATCTTTACTACGTAAGTTAAAACCATTCTTTATAGATTTTCAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4V0HCP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.