Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   DQM45_RS02145 Genome accession   NZ_LS483388
Coordinates   407147..409129 (+) Length   660 a.a.
NCBI ID   WP_003084932.1    Uniprot ID   -
Organism   Streptococcus porcinus strain NCTC10999     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 402147..414129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM45_RS02130 (NCTC10999_00434) - 403046..404206 (-) 1161 WP_394342209.1 D-alanyl-D-alanine carboxypeptidase family protein -
  DQM45_RS02135 (NCTC10999_00435) pbp3 404322..405602 (-) 1281 WP_262863908.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  DQM45_RS02140 (NCTC10999_00436) pbp3 405583..406821 (-) 1239 WP_003083740.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  DQM45_RS02145 (NCTC10999_00437) amiA3 407147..409129 (+) 1983 WP_003084932.1 peptide ABC transporter substrate-binding protein Regulator
  DQM45_RS02150 (NCTC10999_00438) amiC 409199..410698 (+) 1500 WP_003084936.1 ABC transporter permease Regulator
  DQM45_RS02155 (NCTC10999_00439) amiD 410698..411624 (+) 927 WP_003085634.1 oligopeptide ABC transporter permease OppC Regulator
  DQM45_RS02160 (NCTC10999_00440) amiE 411633..412703 (+) 1071 WP_003085730.1 ABC transporter ATP-binding protein Regulator
  DQM45_RS02165 (NCTC10999_00441) amiF 412696..413619 (+) 924 WP_003084166.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 73398.87 Da        Isoelectric Point: 6.1459

>NTDB_id=1139784 DQM45_RS02145 WP_003084932.1 407147..409129(+) (amiA3) [Streptococcus porcinus strain NCTC10999]
MKNGKWLAAVGVAILSVSVLAACSNGSSKDSKSKTYSYVYTTDPDTLDYLISGRSTTSDIIQNSIDGLMEYDNMGNLVPS
VAKSWTVSKDGLTYTYKIRKDSKWYTADGEEYANVTADDFVTGLKHAADKGSDALYLVQDSIKGLSDYVEGKTKDFSTVG
VKAVDKNTLQYTLNKPESFWNSKLTYGILSPVNADFLKSKGKDFGKASDSSSILYNGPFLISSLTSKSSIEFVKNENYWD
KEDVHVDGVQLTYYDGQDQESLFRNFDKGAYSAARLFPTTPSYSKVKKNYGDNIIYAPQKSNTYYATFNLNRTAYEHTKK
TSDKQKEDTRKAVLNKDFRQALTFGFNRKSYTAQTAGEEAAGKSLRNTLVPPAFVQIDGQDFGKTVEKELATYGDQWKDV
NLADAQDGLYNPEKAKMQMDKAKKALEAQGVQFPIHLDMPQDQTASGLMQQAQSMKQSIEKSLGKENVVVDIIELNSDTY
NNITYLAETTNQQDWDLSTASGWSPDYADPSSYLDIFNPTMAAAQTKFIGINPVKDVAIANEAGLEEFSNLDNEAGKIID
NQDERFKKYAKAQAALTDSAVYIPTYSLGGTPSVTKVVPFTGAFGWSGNKSDVSTFYKYIKLQDKPVTSKDYSQALKKWK
KDKEKSNKKYAESLEKHMEK

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=1139784 DQM45_RS02145 WP_003084932.1 407147..409129(+) (amiA3) [Streptococcus porcinus strain NCTC10999]
ATGAAAAATGGCAAGTGGTTAGCTGCTGTTGGGGTGGCGATTTTATCAGTCTCTGTCCTAGCGGCTTGTAGCAATGGATC
AAGCAAAGACAGTAAGTCAAAAACTTACAGTTATGTTTATACAACAGATCCAGATACTTTGGATTATTTGATTTCAGGAC
GTTCAACAACAAGTGATATAATCCAAAATAGTATTGACGGCTTAATGGAATATGATAACATGGGAAATCTAGTTCCCTCA
GTTGCTAAAAGCTGGACAGTATCTAAAGACGGCTTAACATATACCTATAAAATTCGTAAGGATTCAAAATGGTACACTGC
TGATGGTGAAGAGTACGCAAATGTGACAGCAGATGATTTTGTAACTGGTTTGAAGCATGCTGCTGATAAGGGATCAGATG
CTCTTTATCTTGTACAAGATTCTATAAAAGGTCTGAGTGATTATGTCGAAGGAAAAACCAAGGACTTCTCAACTGTAGGC
GTAAAAGCTGTTGATAAAAATACCCTTCAATACACCCTTAATAAACCAGAAAGTTTTTGGAATTCAAAATTAACATATGG
AATCCTTTCACCTGTAAATGCTGACTTTTTAAAATCTAAAGGTAAGGATTTTGGTAAAGCATCAGATTCATCTTCCATCT
TATACAATGGACCATTCCTGATTTCATCTTTAACGAGCAAGTCATCTATTGAATTTGTCAAAAATGAAAATTATTGGGAT
AAAGAAGATGTCCATGTTGATGGTGTACAGTTAACTTACTATGATGGTCAAGATCAAGAGTCACTATTTAGGAATTTTGA
CAAAGGTGCTTATTCTGCAGCGCGTCTTTTCCCTACAACACCTTCTTACTCAAAAGTTAAGAAAAATTATGGTGACAATA
TCATTTATGCACCGCAAAAATCAAACACTTATTATGCTACATTCAATCTGAATCGTACAGCTTATGAGCATACTAAGAAA
ACAAGTGATAAACAAAAAGAGGATACCCGTAAGGCTGTTTTAAATAAAGATTTCCGTCAAGCCTTGACATTTGGTTTCAA
TAGAAAATCATATACAGCTCAGACTGCAGGTGAAGAGGCAGCTGGTAAATCGCTTCGTAATACTTTAGTTCCGCCTGCAT
TTGTTCAAATTGACGGTCAAGATTTTGGAAAAACGGTAGAAAAAGAGCTAGCTACTTACGGAGATCAATGGAAAGATGTC
AATCTTGCTGATGCCCAAGATGGTCTCTATAATCCAGAGAAAGCTAAAATGCAAATGGATAAGGCCAAAAAAGCTTTAGA
AGCTCAAGGGGTACAATTCCCGATTCACCTTGACATGCCTCAAGACCAGACTGCATCCGGCTTAATGCAACAAGCTCAAT
CTATGAAACAATCTATTGAAAAATCACTAGGAAAAGAAAATGTGGTTGTTGATATTATTGAACTTAATTCAGACACATAT
AACAACATCACATATTTGGCTGAAACAACCAATCAACAAGACTGGGATCTCTCAACTGCCTCAGGTTGGAGCCCAGACTA
TGCTGATCCTTCTTCTTACTTAGATATCTTCAATCCAACAATGGCGGCTGCTCAAACAAAATTCATTGGTATTAATCCAG
TAAAAGACGTGGCTATTGCTAATGAAGCTGGTTTGGAAGAGTTTTCAAACTTAGACAATGAAGCTGGTAAAATTATAGAT
AATCAGGATGAGCGATTTAAAAAATATGCCAAAGCGCAAGCTGCTTTAACAGATTCAGCAGTTTATATTCCAACCTACTC
ACTAGGTGGAACTCCCTCTGTTACTAAAGTGGTACCATTTACAGGAGCCTTTGGATGGTCTGGTAATAAATCTGATGTAA
GTACATTTTATAAATACATAAAACTTCAAGATAAACCTGTAACATCAAAAGACTATAGCCAAGCTTTGAAAAAATGGAAA
AAAGATAAAGAAAAATCTAATAAAAAATATGCTGAATCTCTAGAAAAGCATATGGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMG 18311

53.788

100

0.538
  amiA3 Streptococcus thermophilus LMD-9

53.636

100

0.536
  amiA Streptococcus salivarius strain HSISS4

53.485

100

0.535

Multiple sequence alignment