Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   DQM45_RS02155 Genome accession   NZ_LS483388
Coordinates   410698..411624 (+) Length   308 a.a.
NCBI ID   WP_003085634.1    Uniprot ID   -
Organism   Streptococcus porcinus strain NCTC10999     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 405698..416624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM45_RS02145 (NCTC10999_00437) amiA3 407147..409129 (+) 1983 WP_003084932.1 peptide ABC transporter substrate-binding protein Regulator
  DQM45_RS02150 (NCTC10999_00438) amiC 409199..410698 (+) 1500 WP_003084936.1 ABC transporter permease Regulator
  DQM45_RS02155 (NCTC10999_00439) amiD 410698..411624 (+) 927 WP_003085634.1 oligopeptide ABC transporter permease OppC Regulator
  DQM45_RS02160 (NCTC10999_00440) amiE 411633..412703 (+) 1071 WP_003085730.1 ABC transporter ATP-binding protein Regulator
  DQM45_RS02165 (NCTC10999_00441) amiF 412696..413619 (+) 924 WP_003084166.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34441.32 Da        Isoelectric Point: 7.1552

>NTDB_id=1139786 DQM45_RS02155 WP_003085634.1 410698..411624(+) (amiD) [Streptococcus porcinus strain NCTC10999]
MATIDKSKFEFVELDSYASEVIDAPAYSYWKSVFRQFFSRKSTVLMLIILIAIILMSFIYPMFANYDFGDVSNINDFSKR
YISPGAEYWFGTDKNGQSLFDGVWYGARNSILISVIATMINMLLGVVVGALWGVSKAVDKVMIEVYNVISNLPQMLIIIV
LTYSIGAGFWNLIFAFCVTGWIGIAYSVRVQVLRYRDLEYNLASQTLGTPIHKIATKNLLPQLVSVIVSMVSLLLPAYIS
SEAFLSFFGLGLPLSEPSLGRLISNYSSNLTTNAYLFWIPLTTLILVSLPLYIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1139786 DQM45_RS02155 WP_003085634.1 410698..411624(+) (amiD) [Streptococcus porcinus strain NCTC10999]
ATGGCAACCATTGACAAAAGTAAATTTGAGTTTGTTGAACTCGACAGTTATGCATCAGAAGTCATTGATGCCCCAGCTTA
CTCATACTGGAAATCTGTTTTTCGTCAGTTCTTTTCACGTAAATCAACTGTATTGATGTTGATTATATTAATTGCAATTA
TTTTAATGAGCTTTATCTATCCTATGTTTGCAAATTATGATTTTGGCGATGTAAGTAATATTAATGATTTTTCAAAACGT
TATATTTCACCAGGCGCTGAGTATTGGTTTGGTACTGATAAAAATGGACAGTCATTATTTGATGGCGTTTGGTATGGTGC
AAGGAATTCTATTTTAATTTCTGTTATTGCAACAATGATTAATATGCTTTTAGGTGTGGTAGTCGGTGCTTTATGGGGTG
TTTCTAAAGCTGTTGATAAAGTTATGATTGAAGTCTATAATGTTATTTCGAACTTGCCACAAATGTTAATTATTATCGTT
TTAACCTACTCTATTGGAGCAGGATTTTGGAATTTGATATTTGCCTTTTGTGTAACAGGCTGGATTGGTATTGCCTATTC
TGTGAGGGTTCAAGTGCTTCGTTATCGTGATTTAGAATATAATTTAGCCAGTCAAACGTTAGGCACACCAATACATAAAA
TTGCAACTAAGAACTTATTGCCACAATTGGTTTCTGTTATTGTATCAATGGTATCTTTATTACTTCCAGCCTATATTTCT
TCTGAAGCATTCCTATCCTTCTTTGGTTTAGGATTACCACTTTCAGAACCAAGCCTTGGGCGTTTAATTTCTAACTACTC
CTCAAACTTGACAACAAATGCTTATTTATTCTGGATTCCTTTAACCACTCTTATTTTAGTGTCGCTACCTCTTTATATTG
TAGGACAAAACTTAGCTGACGCTAGTGATCCAAGAACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

73.701

100

0.737
  amiD Streptococcus thermophilus LMG 18311

72.403

100

0.724
  amiD Streptococcus thermophilus LMD-9

72.403

100

0.724

Multiple sequence alignment