Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   DQM45_RS02150 Genome accession   NZ_LS483388
Coordinates   409199..410698 (+) Length   499 a.a.
NCBI ID   WP_003084936.1    Uniprot ID   -
Organism   Streptococcus porcinus strain NCTC10999     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 404199..415698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM45_RS02135 (NCTC10999_00435) pbp3 404322..405602 (-) 1281 WP_262863908.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  DQM45_RS02140 (NCTC10999_00436) pbp3 405583..406821 (-) 1239 WP_003083740.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  DQM45_RS02145 (NCTC10999_00437) amiA3 407147..409129 (+) 1983 WP_003084932.1 peptide ABC transporter substrate-binding protein Regulator
  DQM45_RS02150 (NCTC10999_00438) amiC 409199..410698 (+) 1500 WP_003084936.1 ABC transporter permease Regulator
  DQM45_RS02155 (NCTC10999_00439) amiD 410698..411624 (+) 927 WP_003085634.1 oligopeptide ABC transporter permease OppC Regulator
  DQM45_RS02160 (NCTC10999_00440) amiE 411633..412703 (+) 1071 WP_003085730.1 ABC transporter ATP-binding protein Regulator
  DQM45_RS02165 (NCTC10999_00441) amiF 412696..413619 (+) 924 WP_003084166.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 56020.63 Da        Isoelectric Point: 10.1472

>NTDB_id=1139785 DQM45_RS02150 WP_003084936.1 409199..410698(+) (amiC) [Streptococcus porcinus strain NCTC10999]
MKKYIIERILRSLISILLVTTLTYVIVFTLVPTNLIFKQDPNYNKMVTTPDKKENYRNTIFERMGYISYYNSKELEANAE
KIDKSVSVEPSKANQKIYQKYIKSIGNGWKLKRFEESKKFYAVRNIPIYERVWNFFSRLIVIDHPWVIQDKKNPNLARYI
RPEIDPAVGPALVGSGTKHKYMLYFNGQFPFVHQNFIGFNLGTSYPTYANIPVIQVITQEQGRTLSKEVTFPNGTKKFSP
INIYSRTYKSPSKADARDRMNFGKDDPYTATENNHAEPSMIANSFIIGMIGVLLSYIFGLPIGMLMAYYKDGIFDRFSTG
ATTFMLALPSIALIYIVRFLGSMVGLPDTFPLLGASDPKSYVLPALILGILGTPGNVVWFRRYLVDLQGSDFVRFARAKG
LTEAEISKNHLFKQAMVPIVNGIPQAVVATIAGATLTETVFAFPGMGKMLIDAIKAANNTMVVGLVFIFAVLSILALLAG
DILMTILDPRIKLSSKGGK

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=1139785 DQM45_RS02150 WP_003084936.1 409199..410698(+) (amiC) [Streptococcus porcinus strain NCTC10999]
ATGAAAAAGTATATTATTGAGCGCATCTTGAGGTCTTTAATATCAATCTTGTTGGTAACTACACTGACTTACGTTATTGT
TTTTACACTTGTTCCAACAAATTTGATTTTTAAACAAGATCCTAATTATAACAAGATGGTGACAACACCAGATAAAAAAG
AAAATTATCGAAATACGATTTTCGAGCGTATGGGCTATATTTCCTATTATAATAGTAAAGAATTAGAAGCTAACGCTGAG
AAAATAGATAAATCTGTTAGCGTCGAGCCATCAAAGGCTAATCAAAAAATATATCAAAAATATATCAAATCCATCGGAAA
TGGTTGGAAATTGAAACGATTTGAAGAAAGTAAAAAATTCTATGCAGTCCGTAACATACCAATTTATGAACGGGTTTGGA
ATTTTTTCAGCCGGTTAATAGTGATTGACCATCCATGGGTAATTCAAGACAAAAAGAATCCAAATTTAGCTCGTTATATT
CGTCCAGAAATAGATCCTGCAGTAGGTCCAGCTTTGGTTGGTTCAGGAACAAAACACAAGTACATGTTATACTTCAATGG
GCAGTTTCCTTTTGTTCACCAGAACTTTATTGGTTTTAATTTAGGGACTTCTTACCCGACTTATGCTAATATCCCTGTTA
TTCAAGTTATCACACAAGAACAAGGGCGTACACTATCTAAAGAAGTAACGTTCCCAAATGGGACTAAGAAGTTTTCACCG
ATAAATATTTATTCTCGTACCTATAAATCACCTAGTAAGGCAGATGCTAGAGATCGAATGAACTTTGGAAAAGATGACCC
ATACACTGCAACTGAGAACAATCATGCAGAGCCGTCAATGATAGCTAATTCTTTCATTATCGGAATGATTGGTGTTTTAC
TATCCTATATCTTTGGCCTTCCAATTGGGATGTTGATGGCTTATTATAAAGATGGGATATTTGATCGTTTCTCTACGGGG
GCTACAACTTTTATGTTGGCACTTCCGAGTATCGCATTGATTTACATTGTTCGTTTTTTGGGCTCAATGGTAGGCCTTCC
AGATACTTTTCCATTGCTAGGGGCGAGTGATCCTAAGTCCTATGTCTTACCGGCTCTTATTTTGGGAATTCTTGGAACGC
CTGGAAATGTAGTCTGGTTCCGTCGATACTTAGTCGACTTGCAAGGTAGTGATTTTGTTCGCTTTGCTCGCGCTAAAGGA
CTGACTGAAGCTGAAATATCTAAAAATCACTTATTTAAACAAGCAATGGTTCCTATTGTTAATGGAATCCCACAAGCAGT
AGTAGCTACTATTGCGGGTGCTACTTTGACTGAGACTGTCTTTGCCTTTCCGGGAATGGGTAAGATGCTGATTGATGCTA
TTAAGGCAGCTAATAATACAATGGTTGTTGGGCTTGTCTTTATATTCGCAGTTCTTTCTATTTTAGCCCTATTAGCTGGT
GACATCTTAATGACAATTCTTGACCCACGTATCAAATTATCTAGTAAAGGAGGGAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

62.325

100

0.623
  amiC Streptococcus thermophilus LMG 18311

62.124

100

0.621
  amiC Streptococcus thermophilus LMD-9

61.924

100

0.619

Multiple sequence alignment