Detailed information NTG1139788

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: DQM45_RS02165
• Genome accession: NZ_LS483388
• Coordinates: 412696..413619 (+)
• Length: 307 a.a.
• NCBI ID: WP_003084166.1
• Uniprot ID: -
• Organism: Streptococcus porcinus strain NCTC10999
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 407696..418619

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQM45_RS02150 (NCTC10999_00438)	amiC	409199..410698 (+)	1500	WP_003084936.1	ABC transporter permease	Regulator
DQM45_RS02155 (NCTC10999_00439)	amiD	410698..411624 (+)	927	WP_003085634.1	oligopeptide ABC transporter permease OppC	Regulator
DQM45_RS02160 (NCTC10999_00440)	amiE	411633..412703 (+)	1071	WP_003085730.1	ABC transporter ATP-binding protein	Regulator
DQM45_RS02165 (NCTC10999_00441)	amiF	412696..413619 (+)	924	WP_003084166.1	ABC transporter ATP-binding protein	Regulator

Sequence

Protein

• Length: 307 a.a.
• Molecular weight: 34638.98 Da
• Isoelectric Point: 6.8600

>NTDB_id=1139788 DQM45_RS02165 WP_003084166.1 412696..413619(+) (amiF) [Streptococcus porcinus strain NCTC10999]
MSEKLVEVKDLEISFGEGKKKFVAVQNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSKGEILYDGKVINGKKSKS
EANELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFKTEEERQEKIKNMMSEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMDPEFVIADEPISALDVSVRAQVLNLLKRMQKEKGLTYLFIAHDLSVVRFISDRIAVIHKGIIVEVAETEELFI
NPVHPYTKSLLSAVPIPDPILERKKKLIVYSVDQHDYSVDKPEMVEIKPGHFVWANKAEVAKYQKEL

Nucleotide

• Length: 924 bp

>NTDB_id=1139788 DQM45_RS02165 WP_003084166.1 412696..413619(+) (amiF) [Streptococcus porcinus strain NCTC10999]
ATGTCTGAGAAATTAGTTGAAGTCAAAGACTTAGAAATTTCCTTCGGTGAAGGAAAGAAAAAATTTGTAGCCGTTCAAAA
TGCTAACTTCTTCATTAACAAAGGAGAGACCTTCTCTCTCGTTGGAGAGTCGGGATCTGGCAAGACCACAATTGGACGTG
CTATCATTGGTTTGAATGATACAAGTAAAGGGGAAATTCTTTACGACGGAAAAGTGATAAATGGTAAAAAGTCAAAGTCT
GAAGCGAATGAATTAATCCGTAAAATTCAGATGATTTTCCAAGATCCAGCTGCCAGTTTAAATGAGCGGGCAACAGTTGA
TTATATCATTTCAGAAGGTCTTTATAATTTTAACCTCTTTAAAACTGAAGAAGAACGACAAGAAAAGATCAAAAATATGA
TGTCAGAGGTAGGTCTGTTATCAGAACACCTCACACGTTATCCCCATGAATTTTCTGGTGGACAACGCCAGAGGATTGGG
ATTGCACGTGCTTTGGTGATGGATCCAGAGTTTGTTATTGCAGATGAACCTATATCAGCCCTTGATGTCTCTGTTCGTGC
CCAAGTCCTAAACCTTTTAAAAAGAATGCAAAAAGAAAAAGGATTAACTTATCTCTTTATTGCGCATGATTTATCAGTTG
TACGTTTTATATCAGACCGAATAGCAGTCATTCATAAGGGGATTATCGTTGAAGTTGCTGAGACAGAAGAACTCTTCATA
AATCCAGTTCATCCTTATACCAAGTCACTTCTATCAGCAGTGCCAATTCCAGACCCAATACTGGAAAGGAAGAAAAAATT
AATTGTCTACTCAGTAGACCAGCACGACTATTCAGTTGATAAACCTGAGATGGTAGAAATAAAACCAGGACATTTTGTAT
GGGCTAACAAAGCTGAAGTTGCTAAATATCAAAAAGAACTATAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (230-262)

• ABC transporter (ABC_tran) (26-178)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMG 18311	83.66	99.674	0.834
amiF	Streptococcus thermophilus LMD-9	83.333	99.674	0.831
amiF	Streptococcus salivarius strain HSISS4	83.333	99.674	0.831