Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA/cilB/dalA   Type   Machinery gene
Locus tag   DQM67_RS04720 Genome accession   NZ_LS483383
Coordinates   923025..923867 (+) Length   280 a.a.
NCBI ID   WP_005590340.1    Uniprot ID   A0AAV3EI75
Organism   Streptococcus cristatus ATCC 51100 strain NCTC 12479     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 918025..928867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM67_RS04695 (NCTC12479_00907) - 918598..919710 (+) 1113 WP_005590346.1 acyl-CoA dehydrogenase family protein -
  DQM67_RS04700 (NCTC12479_00908) - 919714..920628 (+) 915 WP_005590345.1 MBL fold metallo-hydrolase -
  DQM67_RS04705 (NCTC12479_00909) ylqF 920734..921585 (+) 852 WP_005590344.1 ribosome biogenesis GTPase YlqF -
  DQM67_RS04710 (NCTC12479_00910) - 921572..922336 (+) 765 WP_005590343.1 ribonuclease HII -
  DQM67_RS04715 (NCTC12479_00911) - 922356..922919 (+) 564 WP_005591975.1 sugar O-acetyltransferase -
  DQM67_RS04720 (NCTC12479_00912) dprA/cilB/dalA 923025..923867 (+) 843 WP_005590340.1 DNA-processing protein DprA Machinery gene
  DQM67_RS04725 (NCTC12479_00913) topA 923952..926045 (+) 2094 WP_005590338.1 type I DNA topoisomerase -
  DQM67_RS04730 (NCTC12479_00914) - 926116..926610 (+) 495 WP_005590337.1 hypothetical protein -
  DQM67_RS04735 (NCTC12479_00915) trmFO 926704..928038 (+) 1335 WP_005590335.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 31172.94 Da        Isoelectric Point: 6.3443

>NTDB_id=1139504 DQM67_RS04720 WP_005590340.1 923025..923867(+) (dprA/cilB/dalA) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
MNNFEIYKMKKAGLTNPQVLNILRYAENKEGELSLRDKAVVSECRNPALFMEKYKRLDLPALREEFERFPSFSILDDVYP
WDLCEIYDAPTLLFYQGNLNLLEMPKIAVVGSRDSSKQGNAAVQKIIKELNNELVIVSGLARGIDTVAHMAALQNGGQTI
AVIGTGLDVFYPKANQKLQAYIGKNHLLLTEYGPCEQPLKFHFPERNRIIAGLCRGVIVAEAKMRSGSLITCERAMEEGR
DVFAIPGSILDGKSDGCHHLIQEGAKCITSGSDVLSEFQF

Nucleotide


Download         Length: 843 bp        

>NTDB_id=1139504 DQM67_RS04720 WP_005590340.1 923025..923867(+) (dprA/cilB/dalA) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
ATGAATAATTTTGAAATTTATAAAATGAAAAAAGCTGGCTTAACCAATCCACAGGTCTTAAATATCTTGAGATATGCAGA
AAATAAAGAGGGAGAGCTATCTTTGCGAGACAAGGCCGTCGTTTCTGAGTGTCGCAATCCCGCACTCTTTATGGAAAAAT
ACAAGCGACTTGATCTACCAGCTTTGAGAGAAGAGTTTGAACGTTTCCCGTCCTTTTCAATCTTGGATGATGTGTATCCT
TGGGACTTATGTGAAATTTACGATGCACCGACTTTGCTATTTTATCAAGGAAATCTAAATTTACTAGAAATGCCAAAGAT
AGCGGTTGTTGGCAGTCGAGACAGCAGTAAGCAGGGCAATGCTGCTGTGCAGAAAATCATCAAGGAGTTGAATAATGAAC
TGGTTATCGTCAGCGGACTGGCACGCGGAATTGATACCGTGGCCCACATGGCTGCCCTGCAAAATGGTGGCCAAACTATT
GCTGTCATTGGGACGGGACTAGATGTCTTCTATCCCAAGGCCAATCAAAAGCTGCAGGCTTATATTGGCAAAAATCATTT
ATTGCTGACGGAGTATGGACCGTGTGAGCAACCCTTGAAATTTCATTTTCCAGAGCGAAATCGCATCATCGCTGGTCTTT
GTCGTGGCGTTATCGTGGCGGAAGCTAAGATGCGCTCAGGCAGTCTGATTACCTGTGAGCGGGCAATGGAAGAGGGGCGG
GATGTTTTTGCCATTCCAGGGTCAATTTTAGATGGAAAATCTGACGGTTGTCATCATTTGATTCAAGAGGGCGCAAAGTG
CATCACATCGGGATCTGACGTCCTATCTGAGTTCCAATTCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-269)

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

76.071

100

0.761
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

75.714

100

0.757
  dprA/cilB/dalA Streptococcus pneumoniae D39

75.714

100

0.757
  dprA/cilB/dalA Streptococcus pneumoniae R6

75.714

100

0.757
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

75.714

100

0.757
  dprA/cilB/dalA Streptococcus mitis SK321

75.357

100

0.754
  dprA Streptococcus mutans UA159

68.571

100

0.686
  dprA Lactococcus lactis subsp. cremoris KW2

55

100

0.55
  dprA Bacillus subtilis subsp. subtilis str. 168

44.156

82.5

0.364

Multiple sequence alignment