Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   DQM75_RS00725 Genome accession   NZ_LS483380
Coordinates   125822..126856 (+) Length   344 a.a.
NCBI ID   WP_337660733.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC11824     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 120822..131856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM75_RS00705 - 121862..122053 (+) 192 Protein_106 lactococcin 972 family bacteriocin -
  DQM75_RS00710 (NCTC11824_00141) - 122118..124121 (+) 2004 WP_111692093.1 DUF1430 domain-containing protein -
  DQM75_RS00715 (NCTC11824_00142) - 124123..124770 (+) 648 WP_111692094.1 ABC transporter ATP-binding protein -
  DQM75_RS00720 (NCTC11824_00143) comGA/cglA 124951..125889 (+) 939 WP_111692095.1 competence type IV pilus ATPase ComGA Machinery gene
  DQM75_RS00725 (NCTC11824_00144) comYB 125822..126856 (+) 1035 WP_337660733.1 competence type IV pilus assembly protein ComGB Machinery gene
  DQM75_RS00730 (NCTC11824_00145) comGC/cglC 126857..127180 (+) 324 WP_012514782.1 competence type IV pilus major pilin ComGC Machinery gene
  DQM75_RS00735 (NCTC11824_00146) comGD 127158..127583 (+) 426 WP_111692097.1 competence type IV pilus minor pilin ComGD -
  DQM75_RS00740 (NCTC11824_00147) comGE 127588..127830 (+) 243 WP_012677236.1 competence type IV pilus minor pilin ComGE -
  DQM75_RS00745 (NCTC11824_00148) comYF 127817..128251 (+) 435 WP_037580631.1 competence type IV pilus minor pilin ComGF Machinery gene
  DQM75_RS00750 (NCTC11824_00149) comGG 128229..128591 (+) 363 WP_111692098.1 competence type IV pilus minor pilin ComGG -
  DQM75_RS00755 (NCTC11824_00151) - 128659..130001 (+) 1343 WP_195759329.1 IS3 family transposase -
  DQM75_RS00760 (NCTC11824_00152) comYH 130085..131038 (+) 954 WP_043029264.1 class I SAM-dependent methyltransferase Machinery gene

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 39538.80 Da        Isoelectric Point: 9.4455

>NTDB_id=1139314 DQM75_RS00725 WP_337660733.1 125822..126856(+) (comYB) [Streptococcus equi subsp. zooepidemicus strain NCTC11824]
MISFLRRDISIPGRQGLKKLSSKQQEKLIQLLYNLLSNGFNLTEVIAFLRKSQLLLPVYVTSMEASLLKGNGLADMLAAL
GYSDAVMTQINLADKHGNIKLTLEKIQDYLSQFRQIKRKTIEAVTYPIILLVFLVVIMLGLRHYLIPQLESQNALTDLLL
HLPHYFLGFCLLLLLLIGSFYLYARSCSRLRLFSQLSYYPIIGSLLRQYLTAYYAREWGNLIGQGLELITILEMMSNEKS
QLMRELAKDIKQSLLAGQSFHQRVSAYPFFKKELSLMIEYGDIKSKLGQELDIYSQESWETFFSQLNRATQWIQPIIFLV
VAVVIVMIYAAILLPIYQHMGDVF

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1139314 DQM75_RS00725 WP_337660733.1 125822..126856(+) (comYB) [Streptococcus equi subsp. zooepidemicus strain NCTC11824]
TTGATCAGCTTCTTGCGGAGGGACATCTCAATACCAGGCAGGCAAGGCTTGAAAAAATTATCCAGTAAGCAGCAGGAAAA
GCTTATCCAATTGCTCTATAACCTATTGTCTAACGGCTTTAATTTGACAGAGGTCATTGCTTTTTTGAGAAAAAGCCAGC
TGCTACTGCCAGTCTATGTTACAAGTATGGAAGCAAGCCTATTAAAGGGCAACGGCCTTGCTGACATGCTAGCAGCCTTG
GGCTACTCTGATGCTGTTATGACACAAATTAATCTGGCAGATAAGCATGGCAATATCAAGCTAACCTTGGAAAAAATTCA
GGACTATCTGAGTCAATTTCGCCAAATCAAGCGAAAGACCATCGAGGCAGTCACTTATCCGATCATACTTTTGGTTTTTT
TAGTGGTTATCATGCTAGGCTTGCGGCATTACCTAATCCCTCAGCTAGAGAGTCAAAATGCCTTGACTGACTTGTTGCTT
CATTTGCCTCATTATTTCTTAGGTTTTTGTTTGCTTTTGCTTTTGCTAATTGGCTCTTTTTACCTATATGCCAGATCTTG
TAGTCGGCTAAGGCTATTTAGTCAGCTGAGCTATTATCCTATCATTGGGTCCTTATTGCGGCAATATTTGACAGCCTACT
ATGCTAGGGAATGGGGCAACCTCATCGGACAAGGCTTAGAATTAATCACCATTTTGGAGATGATGTCAAACGAAAAGTCA
CAGCTCATGCGAGAGCTTGCCAAGGATATCAAGCAGAGTCTACTAGCTGGCCAGTCCTTTCATCAAAGGGTTTCAGCTTA
TCCCTTTTTTAAAAAGGAGCTAAGCCTAATGATTGAATATGGTGACATCAAATCAAAGCTTGGTCAGGAATTAGATATCT
ATTCCCAAGAAAGCTGGGAGACCTTTTTTAGTCAGCTTAATCGGGCAACACAATGGATCCAGCCGATTATTTTTTTAGTG
GTTGCTGTGGTTATTGTGATGATTTATGCTGCTATTTTATTACCAATTTATCAACATATGGGAGATGTTTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(215-335)

Type II secretion system (T2SS), protein F (T2SSF)

(29-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

54.277

98.547

0.535
  comYB Streptococcus mutans UA159

54.277

98.547

0.535
  comYB Streptococcus gordonii str. Challis substr. CH1

51.471

98.837

0.509
  comGB/cglB Streptococcus mitis NCTC 12261

48.512

97.674

0.474
  comGB/cglB Streptococcus mitis SK321

48.348

96.802

0.468
  comGB/cglB Streptococcus pneumoniae Rx1

47.748

96.802

0.462
  comGB/cglB Streptococcus pneumoniae D39

47.748

96.802

0.462
  comGB/cglB Streptococcus pneumoniae R6

47.748

96.802

0.462
  comGB/cglB Streptococcus pneumoniae TIGR4

47.748

96.802

0.462
  comGB Lactococcus lactis subsp. cremoris KW2

47.239

94.767

0.448

Multiple sequence alignment