Detailed information
Bioinformatically predicted
Overview
| Name | comYF | Type | Machinery gene |
| Locus tag | DQM75_RS00745 | Genome accession | NZ_LS483380 |
| Coordinates | 127817..128251 (+) | Length | 144 a.a. |
| NCBI ID | WP_037580631.1 | Uniprot ID | - |
| Organism | Streptococcus equi subsp. zooepidemicus strain NCTC11824 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| IScluster/Tn | 128659..130001 | 127817..128251 | flank | 408 |
Gene organization within MGE regions
Location: 127817..130001
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQM75_RS00745 (NCTC11824_00148) | comYF | 127817..128251 (+) | 435 | WP_037580631.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| DQM75_RS00750 (NCTC11824_00149) | comGG | 128229..128591 (+) | 363 | WP_111692098.1 | competence type IV pilus minor pilin ComGG | - |
| DQM75_RS00755 (NCTC11824_00151) | - | 128659..130001 (+) | 1343 | WP_195759329.1 | IS3 family transposase | - |
Sequence
Protein
Download Length: 144 a.a. Molecular weight: 16185.72 Da Isoelectric Point: 10.1988
>NTDB_id=1139316 DQM75_RS00745 WP_037580631.1 127817..128251(+) (comYF) [Streptococcus equi subsp. zooepidemicus strain NCTC11824]
MKDSRLKAFTLIECLIALLVISGSLLVYQALTKSLMVSERYLAANDQDNWLLFSQQLRAELSGTTLQGVSNNRLYVEKDK
KTLSFGQVKSHDFRKAAGNGRGYQPMLFSLSSSQITAVGQQVIIKLKWQSGLERTFIYAFQEKG
MKDSRLKAFTLIECLIALLVISGSLLVYQALTKSLMVSERYLAANDQDNWLLFSQQLRAELSGTTLQGVSNNRLYVEKDK
KTLSFGQVKSHDFRKAAGNGRGYQPMLFSLSSSQITAVGQQVIIKLKWQSGLERTFIYAFQEKG
Nucleotide
Download Length: 435 bp
>NTDB_id=1139316 DQM75_RS00745 WP_037580631.1 127817..128251(+) (comYF) [Streptococcus equi subsp. zooepidemicus strain NCTC11824]
TTGAAAGACAGTAGGTTAAAGGCTTTCACCTTGATAGAGTGCCTTATTGCCTTGCTTGTCATCTCAGGCTCTTTATTAGT
TTATCAGGCCTTAACCAAGAGCCTTATGGTGAGTGAGAGGTATCTAGCAGCAAATGATCAGGACAACTGGCTTTTGTTTT
CCCAGCAATTGCGAGCAGAGCTTTCAGGTACTACCTTACAGGGTGTCTCCAATAATAGGCTATATGTTGAGAAAGACAAG
AAAACTCTGTCCTTTGGACAGGTCAAAAGTCATGATTTTAGAAAAGCAGCTGGCAATGGTCGAGGCTATCAGCCCATGCT
GTTTAGCTTGTCAAGTAGCCAAATAACAGCAGTAGGTCAGCAGGTTATCATCAAGCTGAAATGGCAAAGCGGGTTAGAAA
GGACCTTTATTTATGCATTTCAAGAGAAGGGTTAA
TTGAAAGACAGTAGGTTAAAGGCTTTCACCTTGATAGAGTGCCTTATTGCCTTGCTTGTCATCTCAGGCTCTTTATTAGT
TTATCAGGCCTTAACCAAGAGCCTTATGGTGAGTGAGAGGTATCTAGCAGCAAATGATCAGGACAACTGGCTTTTGTTTT
CCCAGCAATTGCGAGCAGAGCTTTCAGGTACTACCTTACAGGGTGTCTCCAATAATAGGCTATATGTTGAGAAAGACAAG
AAAACTCTGTCCTTTGGACAGGTCAAAAGTCATGATTTTAGAAAAGCAGCTGGCAATGGTCGAGGCTATCAGCCCATGCT
GTTTAGCTTGTCAAGTAGCCAAATAACAGCAGTAGGTCAGCAGGTTATCATCAAGCTGAAATGGCAAAGCGGGTTAGAAA
GGACCTTTATTTATGCATTTCAAGAGAAGGGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYF | Streptococcus mutans UA140 |
52.083 |
100 |
0.521 |
| comYF | Streptococcus mutans UA159 |
51.389 |
100 |
0.514 |
| comGF/cglF | Streptococcus mitis SK321 |
49.635 |
95.139 |
0.472 |
| comGF/cglF | Streptococcus mitis NCTC 12261 |
48.905 |
95.139 |
0.465 |
| comGF | Lactococcus lactis subsp. cremoris KW2 |
47.143 |
97.222 |
0.458 |
| comGF/cglF | Streptococcus pneumoniae D39 |
47.445 |
95.139 |
0.451 |
| comGF/cglF | Streptococcus pneumoniae R6 |
47.445 |
95.139 |
0.451 |
| comGF/cglF | Streptococcus pneumoniae TIGR4 |
47.445 |
95.139 |
0.451 |
| comGF/cglF | Streptococcus pneumoniae Rx1 |
47.445 |
95.139 |
0.451 |