Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   Q426_RS08820 Genome accession   NZ_CP006770
Coordinates   1871087..1872310 (-) Length   407 a.a.
NCBI ID   WP_014623696.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus CY     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1866087..1877310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q426_RS08795 (Q426_09415) - 1866555..1866917 (-) 363 WP_169724974.1 helix-turn-helix domain-containing protein -
  Q426_RS08800 (Q426_09420) - 1867040..1867237 (-) 198 WP_012677176.1 DUF951 domain-containing protein -
  Q426_RS08805 (Q426_09425) dnaN 1867315..1868451 (-) 1137 WP_014622073.1 DNA polymerase III subunit beta -
  Q426_RS08810 (Q426_09430) dnaA 1868608..1869960 (-) 1353 WP_014622072.1 chromosomal replication initiator protein DnaA -
  Q426_RS08815 (Q426_09435) spo0J 1870194..1870967 (-) 774 WP_014623697.1 ParB/RepB/Spo0J family partition protein Regulator
  Q426_RS08820 (Q426_09440) htrA 1871087..1872310 (-) 1224 WP_014623696.1 S1C family serine protease Regulator
  Q426_RS08825 (Q426_09445) rlmH 1872520..1872999 (+) 480 WP_012678751.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  Q426_RS08845 (Q426_09465) - 1874091..1876676 (-) 2586 WP_014623692.1 YfhO family protein -

Sequence


Protein


Download         Length: 407 a.a.        Molecular weight: 42377.90 Da        Isoelectric Point: 5.4809

>NTDB_id=113925 Q426_RS08820 WP_014623696.1 1871087..1872310(-) (htrA) [Streptococcus equi subsp. zooepidemicus CY]
MLKSKNILKPLWVLAIGFLGGLSAALVVNGFSQNSLTSSNAKGATTTSNVSFNNTTDTTKAVKVVQDAVVSVINYQKAAS
PAISNPYINLFGEENDTSAVQKEDELSIHSEGSGVVYKKEGNTAYLVTNNHVIEGAQRIEILTADGSKIVGELVGADTYS
DLAVVKVAADKIKTIAKFADSTKINVGEVAIAIGSPLGTKYANSVTEGIVSSLSRTVTSRNEAGETISTNAIQTDAAINP
GNSGGPLINIEGQVIGINSSKISSTPTGSGGAIEGIGFAIPSSDVVTIINQLESNGAVIRPALGITMVNLSNLSTNALIQ
LNIPASVTSGVVVASTQDGMPALGKLEQYDVITEVDGKEVSSISDLQSVLYSHEINDTIKVTFYRGTAKKKVDIKLTKTT
KDLTKKQ

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=113925 Q426_RS08820 WP_014623696.1 1871087..1872310(-) (htrA) [Streptococcus equi subsp. zooepidemicus CY]
GTGTTAAAATCAAAAAATATATTGAAGCCCTTATGGGTTTTAGCCATTGGATTTTTAGGGGGCTTATCAGCTGCCTTAGT
TGTTAATGGATTTAGTCAGAATTCTCTAACATCTTCAAATGCAAAGGGAGCAACGACAACAAGCAACGTCAGCTTTAATA
ATACAACTGATACAACAAAGGCTGTTAAGGTGGTTCAAGATGCTGTAGTGTCTGTTATTAACTATCAAAAGGCTGCTTCG
CCTGCCATTTCAAATCCTTACATCAATCTTTTCGGAGAAGAAAATGATACCTCAGCAGTACAAAAAGAGGACGAGCTAAG
CATACACAGTGAAGGCTCGGGTGTTGTCTACAAAAAAGAAGGAAATACTGCTTATCTTGTAACCAATAATCATGTCATTG
AGGGAGCTCAACGAATTGAAATTTTAACAGCAGACGGCTCTAAGATCGTTGGAGAACTAGTTGGTGCAGACACTTATTCT
GACCTAGCTGTTGTCAAAGTTGCTGCTGATAAAATCAAAACAATAGCCAAATTTGCAGATTCAACCAAAATTAATGTTGG
AGAGGTAGCCATTGCAATTGGTAGTCCTCTTGGAACAAAATATGCCAACTCAGTGACAGAAGGGATTGTTTCAAGTCTAA
GCCGTACAGTCACTTCAAGAAATGAAGCAGGTGAGACCATCTCAACAAATGCTATCCAAACTGATGCTGCTATCAATCCA
GGTAATTCAGGTGGACCACTCATCAATATTGAAGGCCAGGTTATTGGTATCAACTCAAGTAAAATATCCTCAACACCTAC
TGGTAGCGGCGGAGCCATTGAGGGAATTGGCTTTGCTATTCCATCAAGCGATGTTGTCACCATTATTAACCAACTAGAGT
CTAACGGAGCTGTTATCAGACCAGCCTTAGGCATTACAATGGTAAACTTAAGTAATCTATCAACCAATGCATTGATTCAA
TTGAATATTCCAGCAAGCGTTACCAGCGGTGTTGTCGTAGCCTCTACCCAGGATGGCATGCCTGCTCTTGGTAAATTGGA
GCAGTATGATGTCATTACTGAGGTTGACGGTAAAGAGGTCAGCTCAATTAGTGACCTACAAAGTGTCTTATATAGTCATG
AGATTAACGACACCATTAAGGTAACCTTCTACAGAGGAACTGCTAAGAAGAAAGTTGACATCAAATTAACAAAAACAACT
AAGGATCTAACTAAAAAGCAGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

61.275

100

0.614

  htrA Streptococcus gordonii str. Challis substr. CH1

57.855

98.526

0.57

  htrA Streptococcus mitis NCTC 12261

54.408

97.543

0.531

  htrA Streptococcus pneumoniae Rx1

53.383

98.034

0.523

  htrA Streptococcus pneumoniae D39

53.383

98.034

0.523

  htrA Streptococcus pneumoniae R6

53.383

98.034

0.523

  htrA Streptococcus pneumoniae TIGR4

53.383

98.034

0.523


Multiple sequence alignment