Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   Q426_RS08815 Genome accession   NZ_CP006770
Coordinates   1870194..1870967 (-) Length   257 a.a.
NCBI ID   WP_014623697.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus CY     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1865194..1875967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q426_RS08790 (Q426_09410) ychF 1865356..1866471 (-) 1116 WP_012514685.1 redox-regulated ATPase YchF -
  Q426_RS08795 (Q426_09415) - 1866555..1866917 (-) 363 WP_169724974.1 helix-turn-helix domain-containing protein -
  Q426_RS08800 (Q426_09420) - 1867040..1867237 (-) 198 WP_012677176.1 DUF951 domain-containing protein -
  Q426_RS08805 (Q426_09425) dnaN 1867315..1868451 (-) 1137 WP_014622073.1 DNA polymerase III subunit beta -
  Q426_RS08810 (Q426_09430) dnaA 1868608..1869960 (-) 1353 WP_014622072.1 chromosomal replication initiator protein DnaA -
  Q426_RS08815 (Q426_09435) spo0J 1870194..1870967 (-) 774 WP_014623697.1 ParB/RepB/Spo0J family partition protein Regulator
  Q426_RS08820 (Q426_09440) htrA 1871087..1872310 (-) 1224 WP_014623696.1 S1C family serine protease Regulator
  Q426_RS08825 (Q426_09445) rlmH 1872520..1872999 (+) 480 WP_012678751.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29174.83 Da        Isoelectric Point: 9.7975

>NTDB_id=113924 Q426_RS08815 WP_014623697.1 1870194..1870967(-) (spo0J) [Streptococcus equi subsp. zooepidemicus CY]
MTEILMHIPIEDIVTNPYQPRLQFNQKELEELAHSIQANGLIQPIIVRKSDVFGYELVAGERRFKAAKLAGLQKIPAIVK
EISTLESMQQAIVENLQRSNLNAIEEAKAYQLLIDKNKMTHEDIATYMGKSRPYISNTIRLLQLPDVIRQAIEDGTISAG
HARALLSLSTPKEQELYFHNILDQGLSVRQIEQLVKTKHPPKKRNKHKTIFVKSLEKELSKSLGLPVALSLQKNDSGQLQ
LSFSNQEELNRIINKLL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=113924 Q426_RS08815 WP_014623697.1 1870194..1870967(-) (spo0J) [Streptococcus equi subsp. zooepidemicus CY]
ATGACAGAAATCCTAATGCACATTCCTATCGAGGATATTGTGACAAATCCTTATCAACCACGTCTTCAATTTAATCAAAA
AGAGCTTGAGGAGCTGGCACATTCCATTCAGGCTAATGGTTTGATTCAACCAATCATTGTCAGAAAATCTGATGTATTTG
GCTATGAATTAGTCGCTGGAGAACGACGCTTTAAAGCAGCCAAGCTGGCAGGACTTCAAAAGATTCCAGCAATTGTTAAG
GAAATCTCTACTCTTGAGAGCATGCAGCAGGCCATCGTAGAAAACCTACAGCGCTCAAATTTAAATGCTATTGAAGAGGC
TAAGGCCTATCAATTACTTATTGATAAAAATAAGATGACCCATGAGGACATCGCGACATACATGGGAAAATCACGCCCTT
ATATCAGCAACACCATCAGACTGCTGCAATTACCAGACGTTATTAGACAAGCGATTGAGGACGGTACCATTAGCGCCGGC
CATGCAAGAGCTTTATTATCCTTGTCAACACCAAAAGAGCAGGAGCTTTATTTTCACAACATTCTGGATCAAGGCTTAAG
CGTTAGGCAAATCGAACAGCTGGTAAAGACTAAGCATCCCCCAAAAAAAAGAAACAAACATAAAACCATTTTTGTGAAGT
CTTTAGAAAAAGAGCTCTCAAAATCATTAGGATTACCTGTGGCATTGTCTCTCCAAAAAAATGACAGTGGGCAGCTGCAA
CTGTCATTTTCAAACCAAGAAGAATTGAACAGAATTATCAACAAGTTGCTTTAG

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(148-196)

ParB/Sulfiredoxin domain (ParB_N)

(7-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

62.109

99.611

0.619

Multiple sequence alignment