Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Regulator
Locus tag   DQM56_RS02860 Genome accession   NZ_LS483368
Coordinates   578010..579377 (+) Length   455 a.a.
NCBI ID   WP_012515170.1    Uniprot ID   A0AAW3GNZ0
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC6176     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 573010..584377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM56_RS02835 (NCTC6176_00568) - 573608..574501 (+) 894 WP_024273139.1 helix-turn-helix domain-containing protein -
  DQM56_RS02845 (NCTC6176_00570) - 574854..574994 (+) 141 WP_012515166.1 hypothetical protein -
  DQM56_RS10005 (NCTC6176_00571) - 575107..575265 (+) 159 WP_021320463.1 hypothetical protein -
  DQM56_RS02850 (NCTC6176_00573) - 575448..575615 (+) 168 WP_012515168.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  DQM56_RS02855 (NCTC6176_00574) comA 575842..577995 (+) 2154 WP_012678371.1 peptide cleavage/export ABC transporter ComA Regulator
  DQM56_RS02860 (NCTC6176_00575) comB 578010..579377 (+) 1368 WP_012515170.1 bacteriocin secretion accessory protein Regulator
  DQM56_RS02865 (NCTC6176_00576) - 579886..580122 (+) 237 WP_024273149.1 hypothetical protein -
  DQM56_RS02870 (NCTC6176_00577) nrdF 580580..581593 (+) 1014 WP_012678369.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  DQM56_RS02875 (NCTC6176_00578) nrdI 581595..582005 (+) 411 WP_043038720.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  DQM56_RS02880 (NCTC6176_00579) nrdE 582051..584225 (+) 2175 WP_111710405.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50812.92 Da        Isoelectric Point: 5.1918

>NTDB_id=1138888 DQM56_RS02860 WP_012515170.1 578010..579377(+) (comB) [Streptococcus equi subsp. zooepidemicus strain NCTC6176]
MNNNILESAEFYNRRYHNFSSRVILPTLLLFLFGVFFLAFAKKEISIISTATVEPNIILSNIQSTSNNTILTNNLKDNKY
VKFGDLLIKYDSRKEGIQQETYQTQLNNLQIQKEQLELLKASIEAGNSQFPEKDNYGYYQTFIDYLNQINTLSANVNQQN
ENVSSQNTAASNQQVEIENAIKGLTSQISDYQSVRSAIQNGTVVDLDNRAYSIYRSYLTQTSSLVDNTDKTAVINQFVAQ
IDSQINQLESSVAGYRIQHAGSGVQQSYSSTLESQLASLKAQSITKVEQELSALSNQITELEGTNKLQKNTSSKTSIVAN
EDGVLHLNQEFIGANIVPEGTIFAQVYPEMKKGTVVKITGYLPSTEISSISIGDTARFSTKDDNGETLDLIVKLSSIDNA
ATKTKNGNYFKVESKLQLKEKEAQLLKYGLEGKFILITGTKSYLNYYIDKFIGEK

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1138888 DQM56_RS02860 WP_012515170.1 578010..579377(+) (comB) [Streptococcus equi subsp. zooepidemicus strain NCTC6176]
ATGAATAACAATATATTAGAAAGTGCGGAATTTTATAACCGTCGTTACCACAACTTTTCTAGTCGTGTCATTCTACCTAC
TTTGCTGCTTTTCTTGTTTGGTGTTTTCTTCCTAGCATTTGCAAAGAAAGAAATTTCTATTATTTCAACTGCAACAGTTG
AACCAAATATAATTCTTTCCAATATTCAATCTACAAGTAATAATACAATATTAACCAATAATCTAAAAGATAATAAATAT
GTCAAATTTGGAGACTTATTGATAAAATATGATTCAAGAAAAGAAGGTATTCAACAAGAGACCTATCAAACTCAATTAAA
TAATTTACAAATCCAAAAAGAACAGTTAGAGCTATTAAAAGCAAGTATTGAAGCTGGAAACAGTCAATTTCCAGAAAAAG
ATAATTATGGATATTATCAAACATTTATTGACTACTTAAATCAGATAAACACCTTATCAGCTAATGTAAATCAGCAAAAT
GAAAATGTCTCTTCACAAAATACTGCAGCTAGCAATCAGCAAGTAGAAATTGAGAATGCCATCAAAGGTCTCACAAGTCA
AATTTCAGATTATCAATCTGTTCGCTCGGCGATTCAAAATGGAACAGTGGTAGATCTTGATAATCGGGCTTATTCTATCT
ATAGGAGTTATCTAACTCAAACATCGAGTTTGGTAGATAATACTGATAAAACCGCTGTTATTAATCAATTTGTTGCTCAA
ATTGATAGTCAGATCAATCAACTAGAGAGTAGTGTAGCTGGTTATCGGATTCAGCATGCTGGTTCAGGAGTGCAACAATC
TTACTCTTCAACTCTAGAGAGTCAACTGGCTTCCTTAAAAGCGCAAAGCATAACCAAAGTTGAGCAAGAGTTGTCTGCTT
TGTCGAATCAAATTACAGAATTAGAGGGAACAAATAAACTTCAGAAGAACACATCATCTAAGACCTCTATAGTTGCCAAT
GAAGATGGTGTGTTGCATCTTAATCAGGAATTTATTGGTGCAAATATTGTTCCTGAAGGAACAATATTTGCTCAAGTTTA
TCCAGAAATGAAAAAAGGAACTGTTGTAAAAATCACAGGTTATTTACCTTCGACGGAAATATCAAGTATTTCTATTGGAG
ATACAGCACGATTTTCCACGAAAGATGATAATGGCGAAACTCTTGATTTAATAGTTAAATTATCTAGTATTGACAATGCT
GCAACTAAAACAAAAAATGGGAATTATTTTAAAGTTGAATCTAAGTTACAGCTTAAAGAAAAAGAAGCTCAATTATTGAA
ATATGGGCTTGAGGGTAAATTTATTTTAATTACGGGAACAAAAAGTTACTTGAATTACTATATTGATAAATTTATCGGTG
AGAAGTAA

Domains

Predicted by InterproScan.

HlyD family secretion protein (HlyD_3)

(317-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Streptococcus pneumoniae Rx1

50.221

99.341

0.499
  comB Streptococcus pneumoniae D39

50.221

99.341

0.499
  comB Streptococcus pneumoniae R6

50.221

99.341

0.499
  comB Streptococcus pneumoniae TIGR4

49.336

99.341

0.49
  comB Streptococcus mitis NCTC 12261

49.115

99.341

0.488
  comB Streptococcus mitis SK321

48.894

99.341

0.486
  comB Streptococcus gordonii str. Challis substr. CH1

47.894

99.121

0.475

Multiple sequence alignment