Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   DQM52_RS05600 Genome accession   NZ_LS483367
Coordinates   1088657..1089331 (-) Length   224 a.a.
NCBI ID   WP_014612304.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC5371     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1083657..1094331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM52_RS05575 (NCTC5371_01139) - 1083843..1085120 (-) 1278 WP_111681722.1 pyrimidine-nucleoside phosphorylase -
  DQM52_RS05580 (NCTC5371_01140) - 1085107..1085706 (-) 600 WP_015057597.1 class I SAM-dependent methyltransferase -
  DQM52_RS05585 (NCTC5371_01141) coaA 1085974..1086894 (+) 921 WP_110408128.1 type I pantothenate kinase -
  DQM52_RS05590 (NCTC5371_01142) rpsT 1086948..1087196 (+) 249 WP_009881183.1 30S ribosomal protein S20 -
  DQM52_RS05595 (NCTC5371_01143) ciaH 1087354..1088664 (-) 1311 WP_014612303.1 HAMP domain-containing sensor histidine kinase Regulator
  DQM52_RS05600 (NCTC5371_01144) ciaR 1088657..1089331 (-) 675 WP_014612304.1 response regulator transcription factor Regulator
  DQM52_RS05605 (NCTC5371_01145) - 1089535..1092072 (-) 2538 WP_084916834.1 M1 family metallopeptidase -
  DQM52_RS05610 (NCTC5371_01146) phoU 1092273..1092926 (-) 654 WP_003057760.1 phosphate signaling complex protein PhoU -
  DQM52_RS05615 (NCTC5371_01147) pstB 1093004..1093762 (-) 759 WP_003057749.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25592.57 Da        Isoelectric Point: 4.4128

>NTDB_id=1138848 DQM52_RS05600 WP_014612304.1 1088657..1089331(-) (ciaR) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC5371]
MIKLLLVEDDLSLSNSIFDFLDDFADVTQVFDGDEGLYEAESGIYDLILLDLMLPEKNGFQVLKELREKDIKIPVLIMTA
KESLDDKGQGFELGADDYLTKPFYLEELKMRIQALLKRTGKFTDKNLAFGNVVVDLGQKEVQVDGRPIELLGKEFDLLVY
LLQNQNVILPKTQIFDRLWGFDSDTTISVVEVYVSKIRKKLKGTDFVDKLQTLRSVGYILKSHE

Nucleotide


Download         Length: 675 bp        

>NTDB_id=1138848 DQM52_RS05600 WP_014612304.1 1088657..1089331(-) (ciaR) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC5371]
ATGATCAAACTATTATTAGTAGAAGATGACTTAAGTTTATCCAATTCCATTTTCGATTTTTTGGATGATTTTGCTGATGT
CACACAAGTTTTTGATGGCGATGAAGGCTTATATGAAGCCGAAAGTGGCATTTACGATTTGATTTTACTTGACCTTATGT
TGCCAGAAAAAAATGGCTTCCAAGTCTTGAAAGAATTGCGAGAAAAAGATATTAAAATTCCTGTGCTGATTATGACAGCC
AAAGAAAGCCTAGATGATAAGGGACAGGGCTTTGAATTAGGAGCAGATGATTACCTCACTAAGCCTTTTTACCTGGAGGA
ACTCAAGATGCGAATTCAAGCCCTGTTAAAACGTACAGGGAAATTCACGGATAAAAATCTAGCCTTTGGGAATGTCGTAG
TGGATTTAGGACAAAAAGAAGTTCAAGTGGATGGCCGGCCGATAGAACTATTAGGTAAAGAGTTTGATTTGTTGGTCTAC
CTGTTACAAAATCAGAATGTTATTTTACCTAAAACACAAATTTTTGATCGCTTATGGGGTTTTGATAGCGATACGACCAT
TTCAGTAGTTGAAGTTTACGTTTCTAAAATTAGAAAAAAACTGAAAGGTACAGATTTTGTGGACAAACTGCAGACATTGA
GAAGCGTGGGGTATATTCTAAAAAGCCATGAATAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(145-220)

Response regulator receiver domain (Response_reg)

(5-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

84.163

98.661

0.83
  ciaR Streptococcus pneumoniae D39

84.163

98.661

0.83
  ciaR Streptococcus pneumoniae R6

84.163

98.661

0.83
  ciaR Streptococcus pneumoniae TIGR4

84.163

98.661

0.83
  ciaR Streptococcus mutans UA159

83.71

98.661

0.826
  covR Lactococcus lactis subsp. lactis strain DGCC12653

38.326

100

0.388
  vicR Streptococcus mutans UA159

35.443

100

0.375

Multiple sequence alignment