Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   DQL34_RS11180 Genome accession   NZ_LS483339
Coordinates   2099965..2101200 (+) Length   411 a.a.
NCBI ID   WP_111679766.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain NCTC12958     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2094965..2106200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL34_RS11150 (NCTC12958_02361) - 2095431..2098037 (+) 2607 WP_111679764.1 YfhO family protein -
  DQL34_RS11170 (NCTC12958_02365) - 2098582..2099265 (-) 684 WP_111679765.1 YoaK family protein -
  DQL34_RS11175 (NCTC12958_02366) rlmH 2099281..2099760 (-) 480 WP_084829195.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  DQL34_RS11180 (NCTC12958_02367) htrA 2099965..2101200 (+) 1236 WP_111679766.1 S1C family serine protease Regulator
  DQL34_RS11185 (NCTC12958_02368) spo0J 2101266..2102033 (+) 768 WP_111679767.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 411 a.a.        Molecular weight: 42817.06 Da        Isoelectric Point: 4.7061

>NTDB_id=1137393 DQL34_RS11180 WP_111679766.1 2099965..2101200(+) (htrA) [Streptococcus thermophilus strain NCTC12958]
MKKFNWKKIVAPIAMLVIGLLGGLLGAFILLTAAGVSFTNTTDTGVKTAKTVYTNITDTTKAVKKAQNAVVSVINYQEGS
SSDSLNDLYGRIFGGGDSSDSSQENSKDSDGLQVAGEGSGVIYKKDGKEAYIVTNNHVVDGAKKLEIMLSDGSKITGELV
GKDTYSDLAVVKVSSDKITTVAEFADSNSLTVGEKAIAIGSPLGTEYANSVTEGIVSSLSRTITMQNDNGETVSTNAIQT
DAAINPGNSGGALVNIEGQVIGINSSKISSTSAVAGSAVEGMGFAIPSNDVVEIINQLEKDGKVTRPALGISIADLNSLS
SSATSKLDLPDEVKSGVVVGSVQKGMPADGKLQEYDVITEIDGKKISSKTDIQTNLYSHSIGDTIKVTFYRGKDKKTVDL
KLTKSTEDISD

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=1137393 DQL34_RS11180 WP_111679766.1 2099965..2101200(+) (htrA) [Streptococcus thermophilus strain NCTC12958]
ATGAAAAAATTTAACTGGAAAAAAATAGTCGCGCCAATTGCAATGCTAGTTATTGGCTTACTAGGGGGTTTACTTGGTGC
CTTTATCCTACTAACAGCAGCCGGGGTATCTTTTACCAATACAACAGATACTGGAGTAAAAACGGCTAAGACCGTCTACA
CCAATATAACAGATACAACTAAGGCTGTTAAGAAAGCACAAAATGCCGTTGTTTCTGTCATCAATTATCAAGAAGGTTCA
TCTTCAGATTCTCTAAATGACCTTTATGGCCGTATCTTTGGCGGAGGGGACAGTTCTGATTCTAGCCAAGAAAATTCAAA
AGATTCAGATGGTCTGCAGGTCGCTGGTGAAGGTTCTGGAGTCATCTATAAAAAAGATGGCAAAGAAGCCTACATCGTAA
CCAATAACCACGTTGTCGATGGGGCTAAAAAACTTGAAATCATGCTTTCGGATGGTTCGAAAATTACTGGTGAACTTGTT
GGTAAAGACACTTACTCTGACCTAGCAGTTGTCAAAGTATCTTCAGATAAAATAACAACTGTTGCAGAATTTGCAGACTC
AAACTCCCTTACTGTTGGTGAAAAAGCAATTGCTATCGGTAGCCCACTTGGTACCGAATACGCCAACTCAGTAACAGAAG
GAATCGTTTCTAGTCTTAGCCGTACTATAACGATGCAAAACGATAATGGTGAAACTGTATCAACAAACGCTATCCAAACA
GATGCAGCCATTAACCCTGGTAACTCTGGTGGTGCCCTAGTCAATATTGAAGGACAAGTTATCGGTATTAACTCAAGTAA
AATTTCATCAACGTCTGCAGTCGCTGGTAGTGCTGTTGAAGGTATGGGGTTTGCCATTCCATCAAACGATGTTGTTGAAA
TCATCAATCAATTAGAAAAAGATGGTAAAGTTACACGACCAGCACTAGGGATCTCAATAGCAGATCTTAATAGCCTTTCT
AGCAGCGCAACTTCTAAATTAGATTTACCAGATGAGGTCAAATCCGGTGTTGTTGTCGGTAGTGTTCAGAAAGGTATGCC
AGCTGACGGTAAACTTCAAGAATATGATGTTATCACTGAGATTGATGGTAAGAAGATTAGCTCAAAAACTGATATTCAAA
CCAATCTTTACAGCCATAGTATCGGAGATACTATCAAGGTAACCTTCTATCGTGGTAAAGATAAGAAAACTGTAGATCTT
AAATTAACAAAATCTACAGAAGACATATCTGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

61.787

98.054

0.606

  htrA Streptococcus gordonii str. Challis substr. CH1

57.039

100

0.572

  htrA Streptococcus mitis NCTC 12261

53.79

99.513

0.535

  htrA Streptococcus pneumoniae TIGR4

53.545

99.513

0.533

  htrA Streptococcus pneumoniae D39

53.545

99.513

0.533

  htrA Streptococcus pneumoniae Rx1

53.545

99.513

0.533

  htrA Streptococcus pneumoniae R6

53.545

99.513

0.533


Multiple sequence alignment