Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   DQL34_RS08550 Genome accession   NZ_LS483339
Coordinates   1619211..1619906 (-) Length   231 a.a.
NCBI ID   WP_011681496.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain NCTC12958     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1614211..1624906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL34_RS08535 (NCTC12958_01804) - 1614330..1615579 (+) 1250 Protein_1622 ISL3 family transposase -
  DQL34_RS08540 (NCTC12958_01805) - 1615627..1616895 (-) 1269 WP_084829025.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DQL34_RS08545 (NCTC12958_01806) - 1616981..1619221 (-) 2241 WP_011681495.1 DNA internalization-related competence protein ComEC/Rec2 -
  DQL34_RS08550 (NCTC12958_01807) comEA 1619211..1619906 (-) 696 WP_011681496.1 helix-hairpin-helix domain-containing protein Machinery gene
  DQL34_RS08555 (NCTC12958_01808) - 1620014..1620769 (-) 756 WP_011681497.1 lysophospholipid acyltransferase family protein -
  DQL34_RS08560 (NCTC12958_01809) - 1620959..1621834 (+) 876 WP_370869446.1 polysaccharide deacetylase family protein -
  DQL34_RS08565 (NCTC12958_01810) - 1621884..1622648 (+) 765 WP_011681498.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  DQL34_RS08570 (NCTC12958_01811) - 1622652..1622921 (+) 270 WP_011226404.1 GIY-YIG nuclease family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 24470.41 Da        Isoelectric Point: 4.6300

>NTDB_id=1137377 DQL34_RS08550 WP_011681496.1 1619211..1619906(-) (comEA) [Streptococcus thermophilus strain NCTC12958]
MKEKILAYVKDNRLFVSVIAVLMVIFCFFLWMTCGAGNSMEAETSYTDVTALSTSSSKQSSQSLSEASSQSKTEGSEKVK
SKVTVDVKGAVVNPGVYTLKAGARVTDVIQEAGGMTEDADAKSVNLAASLSDEEVIYVANKDENVSVLDQTGTGQVSDKG
GQAVSKDGKINLNTATSEQLQTISGIGAKRAEDVIAYRESHGGFQSVDDLKNVSGIGDKTLDKIRESLYVA

Nucleotide


Download         Length: 696 bp        

>NTDB_id=1137377 DQL34_RS08550 WP_011681496.1 1619211..1619906(-) (comEA) [Streptococcus thermophilus strain NCTC12958]
GTGAAGGAAAAGATTCTAGCCTATGTCAAAGATAATCGTCTGTTTGTGAGTGTCATCGCTGTACTGATGGTGATTTTTTG
CTTCTTTTTATGGATGACTTGTGGTGCCGGCAACAGCATGGAGGCGGAGACGTCTTATACAGATGTGACAGCTTTGTCAA
CGTCTTCATCCAAACAAAGTTCACAGTCTCTTTCTGAGGCGTCTTCCCAGTCAAAGACCGAAGGAAGTGAAAAAGTTAAG
TCAAAAGTAACGGTAGATGTTAAGGGGGCTGTGGTCAATCCAGGTGTCTATACGCTAAAGGCAGGCGCTAGGGTGACAGA
TGTCATTCAGGAAGCTGGAGGAATGACAGAAGATGCAGACGCTAAGAGTGTTAACTTAGCCGCAAGCTTGTCAGATGAAG
AGGTTATTTATGTAGCCAATAAAGATGAAAATGTTTCTGTCCTTGATCAAACAGGTACTGGTCAGGTCTCTGACAAAGGA
GGGCAGGCTGTATCTAAGGATGGCAAAATTAACTTAAATACAGCGACCTCAGAGCAGTTGCAAACCATTTCTGGAATTGG
AGCTAAGCGGGCAGAGGATGTCATTGCCTATCGTGAAAGTCATGGCGGCTTTCAGTCCGTAGATGACTTGAAAAATGTCT
CAGGAATTGGTGATAAAACATTAGATAAAATCAGAGAGTCCCTCTATGTGGCTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(167-228)

SLBB domain (SLBB)

(85-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Streptococcus thermophilus LMD-9

100

100

1
  comEA/celA/cilE Streptococcus mitis SK321

40.611

99.134

0.403
  comEA/celA/cilE Streptococcus pneumoniae D39

39.035

98.701

0.385
  comEA/celA/cilE Streptococcus pneumoniae R6

39.035

98.701

0.385
  comEA/celA/cilE Streptococcus pneumoniae Rx1

39.035

98.701

0.385
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

39.035

98.701

0.385
  comEA/celA/cilE Streptococcus mitis NCTC 12261

37.719

98.701

0.372

Multiple sequence alignment