Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   DQL47_RS08895 Genome accession   NZ_LS483328
Coordinates   1846826..1848802 (-) Length   658 a.a.
NCBI ID   WP_043053408.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC12090     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1841826..1853802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL47_RS08875 (NCTC12090_01796) amiF 1842342..1843265 (-) 924 WP_012516278.1 ATP-binding cassette domain-containing protein Regulator
  DQL47_RS08880 (NCTC12090_01797) amiE 1843258..1844328 (-) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  DQL47_RS08885 (NCTC12090_01798) amiD 1844337..1845263 (-) 927 WP_021321128.1 oligopeptide ABC transporter permease OppC Regulator
  DQL47_RS08890 (NCTC12090_01799) amiC 1845263..1846762 (-) 1500 WP_043053407.1 ABC transporter permease Regulator
  DQL47_RS08895 (NCTC12090_01800) amiA3 1846826..1848802 (-) 1977 WP_043053408.1 peptide ABC transporter substrate-binding protein Regulator
  DQL47_RS08900 (NCTC12090_01801) pbp3 1849110..1850348 (+) 1239 WP_041785731.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  DQL47_RS08905 (NCTC12090_01802) pbp3 1850671..1851906 (+) 1236 WP_111690410.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  DQL47_RS08910 (NCTC12090_01803) - 1851990..1853171 (+) 1182 WP_012516285.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72860.29 Da        Isoelectric Point: 5.1532

>NTDB_id=1136766 DQL47_RS08895 WP_043053408.1 1846826..1848802(-) (amiA3) [Streptococcus equi subsp. zooepidemicus strain NCTC12090]
MKKSKWLATLGVAALSVSILAACGNSSSKSSESKIYSYVYSSDPSTLDYISTSKATTNDITTNAVDGLLENDQYGNLIPS
LAKDWKVSKDGLTYTYTLRDGIKWYTSDGEEYADVTAEDFVAGVKHAADVNSDALYIIQDSIKGLNDYLNGKTKDFSTVG
VKALDKKTVQYTLNQPESFWNSKLTYSVLAPVNADFLKSKGKDFGKATDPSSILYNGPFLITALTSKSSIELVKNENYWD
AKNVHLDGVQLTFYDGQDQESLFRNFDDGAYSAARLFPTTPSYKTVKKKYGDSITYGQQNATLYYAAFNLNRTSYNHTKK
TSDSQKSDTQKAILNKDFRQAMTFAFDRIAYQAQSAGEDAANKALRSTLVPPTFVQIGDKDFGDVVEEHLVTYGSQWENV
NLDDAQDGLYNPEKAKASFEKAKAALQAEGVQFPIHLDYPMDQTATVLLQQARSMKQSIEKTLGTDNVVIDIIELQRDVY
ENISYLAETPAQNDWDISTASGWGPDYVDPSSYLDIFNPTLANSQTKSIGLEPGKDLAIASAAGLDEFTKLVTEAGKITD
DLNARYTLYAKAQAALTDSAIYIPTISLGGTPRVTKIVPFSGAFAWAGTKNDFYYKYVKLQDKPVTAKQYDKALAEWKKE
KKKSNEKYNNSLEKHIEK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=1136766 DQL47_RS08895 WP_043053408.1 1846826..1848802(-) (amiA3) [Streptococcus equi subsp. zooepidemicus strain NCTC12090]
ATGAAGAAAAGTAAATGGTTGGCAACGCTGGGTGTCGCAGCGCTGTCGGTGTCCATCCTGGCAGCCTGTGGAAACAGCTC
AAGTAAAAGCAGTGAATCAAAGATTTATAGCTATGTCTATTCTAGTGATCCAAGTACTTTAGACTATATCAGTACAAGTA
AAGCAACAACAAATGACATAACAACAAATGCTGTTGATGGGCTTTTGGAAAATGACCAATATGGGAATTTAATCCCCTCT
CTTGCTAAGGATTGGAAGGTCTCAAAGGACGGCTTGACCTATACCTACACGCTTCGTGATGGGATTAAGTGGTACACATC
TGATGGAGAAGAGTATGCAGATGTGACAGCTGAGGATTTTGTAGCTGGAGTAAAGCACGCAGCAGATGTTAACTCTGATG
CCCTATATATCATTCAGGACTCTATTAAAGGCTTAAACGATTACTTGAACGGTAAGACCAAGGACTTTTCAACCGTAGGT
GTCAAAGCGCTTGACAAAAAAACGGTTCAGTACACCCTTAATCAACCAGAAAGCTTCTGGAATTCAAAGCTAACCTATAG
TGTCCTAGCTCCGGTAAATGCTGACTTCCTAAAATCAAAGGGCAAGGATTTTGGTAAGGCAACAGATCCATCATCTATTC
TGTATAATGGCCCATTTCTTATCACAGCTTTGACAAGTAAATCCTCTATCGAGCTTGTCAAAAACGAAAACTATTGGGAC
GCTAAGAATGTTCACCTTGATGGTGTTCAATTGACCTTTTACGATGGACAGGATCAGGAGTCGTTGTTTAGAAACTTTGA
TGACGGTGCTTACTCAGCGGCGAGATTATTCCCAACAACACCTTCTTACAAAACCGTTAAGAAAAAATATGGAGATAGCA
TTACTTACGGACAACAAAATGCTACTCTCTACTATGCGGCATTTAACCTAAACCGTACGTCTTACAACCATACTAAGAAG
ACCTCAGATAGCCAAAAATCAGATACCCAAAAGGCTATCTTAAACAAGGATTTCCGTCAGGCTATGACATTTGCCTTTGA
TAGAATTGCTTATCAGGCGCAATCAGCAGGTGAAGATGCAGCTAACAAAGCGCTTCGTAGCACACTTGTACCACCGACAT
TTGTGCAAATTGGCGACAAAGACTTTGGTGATGTTGTTGAGGAGCACTTGGTGACCTATGGTAGCCAGTGGGAAAATGTG
AATCTAGATGATGCACAGGATGGCTTGTACAATCCTGAAAAGGCAAAAGCATCATTTGAAAAAGCAAAAGCAGCCCTACA
AGCTGAGGGCGTACAGTTCCCAATCCATCTTGATTACCCAATGGATCAAACTGCAACGGTGCTCTTACAGCAGGCTCGCT
CTATGAAGCAGTCAATTGAGAAAACATTAGGAACTGACAATGTTGTGATTGATATTATTGAGCTTCAGAGAGATGTTTAT
GAAAATATTAGTTATCTCGCCGAAACTCCTGCTCAAAATGACTGGGATATTTCAACGGCTTCTGGCTGGGGACCTGACTA
TGTCGACCCATCATCATATCTTGATATTTTCAACCCAACGCTTGCAAACTCACAAACAAAATCAATTGGACTTGAGCCAG
GTAAGGATTTGGCCATTGCTAGTGCAGCTGGCTTAGACGAATTTACAAAGCTAGTGACAGAGGCAGGTAAGATTACTGAT
GATCTCAATGCCCGCTATACGCTCTACGCTAAGGCTCAAGCGGCATTGACAGACTCTGCTATTTACATCCCAACTATCTC
ACTTGGTGGAACACCACGTGTGACTAAAATCGTACCGTTTTCAGGTGCCTTTGCTTGGGCTGGTACTAAAAATGACTTTT
ATTACAAATACGTCAAGCTACAAGATAAGCCTGTAACTGCTAAACAATATGACAAAGCATTAGCCGAGTGGAAAAAAGAA
AAGAAAAAATCTAACGAAAAATATAATAATTCCCTCGAGAAGCATATTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMG 18311

56.667

100

0.568
  amiA3 Streptococcus thermophilus LMD-9

56.364

100

0.565
  amiA Streptococcus salivarius strain HSISS4

56.297

100

0.564

Multiple sequence alignment