Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   DQL47_RS08885 Genome accession   NZ_LS483328
Coordinates   1844337..1845263 (-) Length   308 a.a.
NCBI ID   WP_021321128.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC12090     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1839337..1850263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL47_RS08875 (NCTC12090_01796) amiF 1842342..1843265 (-) 924 WP_012516278.1 ATP-binding cassette domain-containing protein Regulator
  DQL47_RS08880 (NCTC12090_01797) amiE 1843258..1844328 (-) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  DQL47_RS08885 (NCTC12090_01798) amiD 1844337..1845263 (-) 927 WP_021321128.1 oligopeptide ABC transporter permease OppC Regulator
  DQL47_RS08890 (NCTC12090_01799) amiC 1845263..1846762 (-) 1500 WP_043053407.1 ABC transporter permease Regulator
  DQL47_RS08895 (NCTC12090_01800) amiA3 1846826..1848802 (-) 1977 WP_043053408.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34532.41 Da        Isoelectric Point: 7.1547

>NTDB_id=1136764 DQL47_RS08885 WP_021321128.1 1844337..1845263(-) (amiD) [Streptococcus equi subsp. zooepidemicus strain NCTC12090]
MAAIDKNKFTFVELDSYASEVIDAPAYSYWKSVFRQFFSRKSTVVMLVILIAIILMSFIYPMFANYDFGDVSNINDFSKR
YIAPNAEYWFGTDQNGQSLFDGVWYGARNSILISVIATIINMIIGVVIGGIWGVSKAVDKVMIEVYNIISNLPQMLIIIV
LTYSIGAGFWNLIFAFCVTGWIGIAYSIRVQILRYRDLEYNLASQTLGTPTHKIVIKNLLPQLVSVIVSMVSLLLPSYIS
SEAFLSFFGLGLPITEPSLGRLISNYSNNLTTNAYLFWIPLTTLILVSLPLYIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1136764 DQL47_RS08885 WP_021321128.1 1844337..1845263(-) (amiD) [Streptococcus equi subsp. zooepidemicus strain NCTC12090]
ATGGCAGCAATTGACAAAAATAAATTCACCTTTGTTGAATTAGATAGCTATGCATCAGAAGTCATTGATGCCCCTGCTTA
CTCTTATTGGAAATCTGTCTTTAGGCAATTCTTCTCGCGTAAATCAACCGTTGTGATGCTGGTTATTTTAATCGCTATTA
TTTTGATGAGCTTCATCTATCCTATGTTTGCCAACTATGACTTTGGTGATGTGAGCAATATTAATGATTTTTCAAAGCGT
TATATCGCACCTAATGCAGAGTATTGGTTTGGTACGGATCAAAATGGTCAATCGCTCTTTGATGGTGTTTGGTATGGTGC
TAGAAATTCAATCTTAATTTCAGTCATTGCTACCATCATCAATATGATTATCGGAGTTGTTATCGGTGGTATTTGGGGTG
TTTCCAAGGCAGTTGATAAGGTAATGATTGAGGTGTATAATATCATCTCTAACCTGCCGCAAATGCTTATTATCATTGTA
TTGACTTATTCTATCGGAGCAGGCTTTTGGAACTTGATTTTTGCTTTTTGTGTGACAGGCTGGATTGGAATTGCTTATTC
GATTCGTGTACAAATCTTGCGCTATCGTGATCTAGAATACAATTTAGCCAGTCAAACCCTAGGAACACCGACCCATAAGA
TTGTCATTAAAAACCTTTTGCCTCAATTGGTTTCAGTGATCGTTTCAATGGTTTCCTTGCTATTGCCGTCCTATATTTCA
TCAGAGGCCTTCTTATCCTTCTTTGGCTTGGGATTACCAATCACAGAACCAAGCTTGGGTCGATTGATTTCAAATTATTC
AAACAATTTAACAACGAATGCCTATTTATTCTGGATTCCATTGACAACTCTTATTCTTGTTTCCTTACCTTTATACATTG
TAGGACAAAACTTAGCAGATGCTAGTGATCCAAGGACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

75.649

100

0.756
  amiD Streptococcus thermophilus LMG 18311

75

100

0.75
  amiD Streptococcus thermophilus LMD-9

75

100

0.75

Multiple sequence alignment