Detailed information NTG1136762

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: DQL47_RS08875
• Genome accession: NZ_LS483328
• Coordinates: 1842342..1843265 (-)
• Length: 307 a.a.
• NCBI ID: WP_012516278.1
• Uniprot ID: A0AAW3GKE0
• Organism: Streptococcus equi subsp. zooepidemicus strain NCTC12090
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1837342..1848265

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQL47_RS08875 (NCTC12090_01796)	amiF	1842342..1843265 (-)	924	WP_012516278.1	ATP-binding cassette domain-containing protein	Regulator
DQL47_RS08880 (NCTC12090_01797)	amiE	1843258..1844328 (-)	1071	WP_012516279.1	ABC transporter ATP-binding protein	Regulator
DQL47_RS08885 (NCTC12090_01798)	amiD	1844337..1845263 (-)	927	WP_021321128.1	oligopeptide ABC transporter permease OppC	Regulator
DQL47_RS08890 (NCTC12090_01799)	amiC	1845263..1846762 (-)	1500	WP_043053407.1	ABC transporter permease	Regulator

Sequence

Protein

• Length: 307 a.a.
• Molecular weight: 34670.89 Da
• Isoelectric Point: 6.9308

>NTDB_id=1136762 DQL47_RS08875 WP_012516278.1 1842342..1843265(-) (amiF) [Streptococcus equi subsp. zooepidemicus strain NCTC12090]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNETSSGEIRYDGKIINGKKSKS
EANELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFKTEDERKEKIKQMMSEVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMDPEFVIADEPISALDVSVRAQVLNLLKKIQAEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFV
NPVHPYTKSLLSAVPIPDPILERQKKLVVYHPEQHDYSVDKPSMVEIKPNHFVWANQAEAERYRKEL

Nucleotide

• Length: 924 bp

>NTDB_id=1136762 DQL47_RS08875 WP_012516278.1 1842342..1843265(-) (amiF) [Streptococcus equi subsp. zooepidemicus strain NCTC12090]
ATGTCTGAAAAATTAGTTGAAGTAAAAGACCTGGAGATTTCCTTTGGAGAGGGAAAGAAAAAGTTTGTTGCCGTTAAAAA
TGCCAATTTCTTTATCAATAAAGGAGAAACCTTTTCTCTTGTTGGAGAATCAGGCAGCGGAAAGACAACAATAGGTCGTG
CTATCATTGGCTTAAATGAAACAAGCTCAGGCGAAATCCGCTACGACGGTAAGATTATTAATGGTAAAAAATCAAAATCT
GAAGCTAATGAACTGATTAGAAAAATCCAAATGATTTTTCAGGATCCAGCAGCCAGCCTGAATGAGCGTGCAACGGTTGA
TTATATCATCTCAGAAGGCCTTTATAATTTTAACCTATTCAAAACAGAAGACGAACGTAAAGAAAAAATTAAACAGATGA
TGTCAGAGGTGGGCTTGCTTGCAGAGCACCTGACACGCTACCCTCATGAGTTTTCAGGTGGGCAGCGTCAGCGTATAGGT
ATTGCAAGAGCGCTTGTAATGGATCCGGAGTTTGTTATTGCTGATGAGCCGATTTCAGCTCTTGATGTATCTGTTCGTGC
TCAGGTCTTGAACCTGTTGAAGAAAATACAGGCTGAAAAAGGCTTGACCTATTTATTCATTGCTCATGATTTATCAGTTG
TGCGTTTTATTTCAGATCGTATTGCTGTTATTCACAAAGGAGTAATTGTTGAAGTCGCCGAAACAGAAGAGCTTTTTGTT
AATCCTGTTCACCCTTATACCAAATCTCTGCTGTCAGCGGTACCAATTCCAGATCCCATTTTAGAGCGTCAAAAGAAATT
GGTGGTTTATCATCCAGAGCAGCATGATTATTCTGTTGACAAGCCATCAATGGTGGAAATCAAACCAAATCACTTCGTCT
GGGCTAACCAGGCAGAAGCGGAGCGTTACCGCAAAGAGCTTTAA

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (25-178)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (230-262)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMG 18311	83.007	99.674	0.827
amiF	Streptococcus thermophilus LMD-9	82.68	99.674	0.824
amiF	Streptococcus salivarius strain HSISS4	82.68	99.674	0.824