Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   DQL35_RS09175 Genome accession   NZ_LS483325
Coordinates   1893278..1895254 (-) Length   658 a.a.
NCBI ID   WP_111678547.1    Uniprot ID   A0AAX2LFN7
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC7022     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1888278..1900254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL35_RS09155 (NCTC7022_01850) amiF 1888794..1889717 (-) 924 WP_012516278.1 ATP-binding cassette domain-containing protein Regulator
  DQL35_RS09160 (NCTC7022_01851) amiE 1889710..1890780 (-) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  DQL35_RS09165 (NCTC7022_01852) amiD 1890789..1891715 (-) 927 WP_043030145.1 oligopeptide ABC transporter permease OppC Regulator
  DQL35_RS09170 (NCTC7022_01853) amiC 1891715..1893214 (-) 1500 WP_111678545.1 ABC transporter permease Regulator
  DQL35_RS09175 (NCTC7022_01854) amiA3 1893278..1895254 (-) 1977 WP_111678547.1 peptide ABC transporter substrate-binding protein Regulator
  DQL35_RS09180 (NCTC7022_01855) pbp3 1895563..1896801 (+) 1239 WP_111678549.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  DQL35_RS09185 (NCTC7022_01856) pbp3 1897113..1898348 (+) 1236 WP_111678551.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  DQL35_RS09190 (NCTC7022_01857) - 1898431..1899612 (+) 1182 WP_111678553.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72964.36 Da        Isoelectric Point: 5.0136

>NTDB_id=1136595 DQL35_RS09175 WP_111678547.1 1893278..1895254(-) (amiA3) [Streptococcus equi subsp. zooepidemicus strain NCTC7022]
MKKSKWLTTLGVAALSVSILAACGNSSSKSSESKIYSYVYSSDPSTLDYISTSKATTNDITTNAVDGLLENDQYGNLIPS
LAKDWKVSKDGLTYTYTLRDGIKWYTSDGEEYADVTAEDFVAGVKHAADVNSDALYIIQDSIKGLNDYLNGKTKDFSTVG
VKALDKKTVQYTLNQQESFWNSKLTYSILAPVNADFLKSKGKDFGKATDPSSILYNGPFLITALTSKSSIELVKNENYWD
AKNVHLDGVQLTFYDGQDQESLFRNFDDGAYSAARLFPTTPSYKTVKKKYGDSITYGQQNATLYYAAFNLNRTSYNHTKK
TSDSQKSDTQKAILNKDFRQAMTFAFDRIAYQAQSAGEDAANKALRSTLVPPTFVQIGDKDFGDVVEEHLVTYGSQWENV
NLDDAQDGLYNPEKAKASFEKAKAALQAEGVQFPIHLDYPMDQTATVLLQQARSMKQSIEKTLGTDNVVIDIIELQRDVY
ENISYLAETPAQNDWDISTASGWGPDYVDPSSYLDIFNPTLANSQTKSIGLEPGKDLAIASAAGLDEFTKLVTEAGKITD
DLNARYTLYAKAQAALTDSAIYIPTISLGGTPRVTKIVPFSGAFAWAGTKNDFYYKYVKLQDKPVTVKQYDKALAEWKKE
KKKSNEEYNNSLEKHIEK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=1136595 DQL35_RS09175 WP_111678547.1 1893278..1895254(-) (amiA3) [Streptococcus equi subsp. zooepidemicus strain NCTC7022]
ATGAAGAAAAGTAAATGGTTGACAACGCTGGGTGTCGCGGCGCTGTCGGTGTCCATCCTGGCAGCCTGTGGAAACAGCTC
AAGTAAAAGCAGTGAATCAAAGATTTATAGCTATGTCTATTCTAGTGATCCAAGTACTTTAGACTATATCAGTACAAGTA
AAGCAACAACAAATGACATAACAACGAATGCTGTTGATGGGCTTTTGGAAAATGACCAATATGGGAATTTAATCCCCTCT
CTTGCTAAGGATTGGAAGGTCTCAAAGGATGGCTTGACCTATACCTACACGCTTCGTGATGGGATCAAATGGTACACATC
TGATGGTGAAGAATATGCAGATGTGACAGCTGAGGATTTTGTGGCTGGAGTAAAGCACGCAGCAGATGTTAACTCTGATG
CCCTATATATCATTCAGGACTCTATTAAAGGCTTAAACGATTACTTGAACGGTAAGACCAAGGACTTTTCAACCGTAGGT
GTCAAAGCGCTTGACAAAAAAACAGTTCAGTACACCCTTAATCAACAAGAAAGCTTCTGGAATTCAAAGCTAACCTATAG
TATCCTAGCTCCGGTAAATGCTGACTTCCTAAAATCAAAGGGCAAGGATTTTGGTAAGGCAACAGATCCATCATCTATCC
TGTATAATGGTCCATTTCTTATTACAGCTTTGACAAGTAAATCCTCTATCGAGCTTGTCAAAAACGAAAACTATTGGGAC
GCTAAGAATGTTCACCTTGATGGTGTTCAATTGACCTTTTACGATGGACAGGATCAGGAGTCATTGTTTAGAAACTTTGA
TGACGGAGCTTACTCAGCGGCGAGATTATTCCCAACAACACCTTCTTACAAAACCGTTAAGAAAAAATATGGAGATAGCA
TCACTTACGGACAACAAAATGCTACTCTCTACTATGCGGCATTTAACCTAAACCGTACGTCTTACAACCATACTAAGAAG
ACCTCAGATAGCCAAAAATCAGATACCCAAAAGGCTATCTTAAACAAGGATTTCCGTCAGGCTATGACATTTGCCTTTGA
TAGAATTGCTTATCAGGCGCAATCAGCAGGTGAAGATGCAGCTAACAAAGCGCTTCGTAGCACACTTGTACCACCGACAT
TTGTGCAAATTGGCGACAAAGACTTTGGTGATGTTGTTGAGGAGCACTTGGTGACCTATGGTAGCCAGTGGGAAAATGTA
AATCTAGATGATGCACAGGATGGCTTGTACAATCCTGAAAAGGCAAAAGCATCATTTGAAAAAGCAAAAGCAGCCCTACA
AGCTGAGGGTGTACAGTTCCCAATCCATCTTGATTACCCAATGGATCAAACTGCAACGGTGCTCTTACAGCAGGCTCGCT
CTATGAAGCAGTCAATCGAGAAAACATTAGGAACTGACAATGTTGTGATTGATATTATTGAGCTTCAGAGAGATGTTTAT
GAAAATATTAGTTATCTCGCCGAAACTCCTGCTCAAAATGACTGGGATATTTCAACGGCTTCTGGCTGGGGACCTGACTA
TGTCGACCCATCATCATATCTTGATATTTTCAATCCAACGCTTGCAAACTCACAAACAAAATCAATTGGACTTGAGCCAG
GTAAGGATTTGGCTATTGCTAGTGCAGCTGGCTTAGACGAATTTACAAAGCTAGTGACAGAGGCAGGTAAGATTACTGAT
GATCTCAATGCCCGCTATACGCTCTACGCTAAGGCTCAAGCGGCATTGACAGACTCTGCTATTTACATCCCAACTATCTC
ACTTGGTGGAACACCACGTGTAACTAAAATCGTACCGTTTTCAGGTGCCTTTGCTTGGGCTGGTACTAAAAATGACTTTT
ATTACAAATACGTCAAGCTGCAAGATAAGCCTGTAACTGTTAAACAATATGACAAAGCATTGGCCGAGTGGAAAAAAGAA
AAGAAAAAATCTAACGAAGAATATAACAATTCCCTCGAGAAGCATATTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMG 18311

56.212

100

0.564
  amiA3 Streptococcus thermophilus LMD-9

55.909

100

0.561
  amiA Streptococcus salivarius strain HSISS4

55.842

100

0.559

Multiple sequence alignment