Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   DQL35_RS09160 Genome accession   NZ_LS483325
Coordinates   1889710..1890780 (-) Length   356 a.a.
NCBI ID   WP_012516279.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC7022     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1884710..1895780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL35_RS09155 (NCTC7022_01850) amiF 1888794..1889717 (-) 924 WP_012516278.1 ATP-binding cassette domain-containing protein Regulator
  DQL35_RS09160 (NCTC7022_01851) amiE 1889710..1890780 (-) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  DQL35_RS09165 (NCTC7022_01852) amiD 1890789..1891715 (-) 927 WP_043030145.1 oligopeptide ABC transporter permease OppC Regulator
  DQL35_RS09170 (NCTC7022_01853) amiC 1891715..1893214 (-) 1500 WP_111678545.1 ABC transporter permease Regulator
  DQL35_RS09175 (NCTC7022_01854) amiA3 1893278..1895254 (-) 1977 WP_111678547.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39734.86 Da        Isoelectric Point: 6.1118

>NTDB_id=1136592 DQL35_RS09160 WP_012516279.1 1889710..1890780(-) (amiE) [Streptococcus equi subsp. zooepidemicus strain NCTC7022]
MTEKQEIILSAKNIVVEFDVRDRVLTAIRDVSLDLYKGEVLAVVGESGSGKSVLTKTFTGMLEANGRVASGTITYAGQEL
TELKNHKDWEAIRGSKIATIFQDPMTSLDPIQTIGSQITEVIVKHQKKSRSEAKALAIDYMTRVGIPEPEKRFGEYPFQY
SGGMRQRIVIAIALACKPDILICDEPTTALDVTIQAQIIDLLKTLQKEYHFTIIFITHDLGVVASIADKVAVMYAGEIIE
YGKVEEIFYDPRHPYTWSLLSSLPQLADEKGVLFSIPGTPPSLYKPIVGDAFAPRSQYAMAIDFEETVPRFTISDTHWAK
TWLLHPDAPKVQKPAVIQDLHQKILKKMSRQEEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1136592 DQL35_RS09160 WP_012516279.1 1889710..1890780(-) (amiE) [Streptococcus equi subsp. zooepidemicus strain NCTC7022]
ATGACTGAAAAACAAGAAATTATATTAAGTGCTAAAAATATTGTTGTAGAGTTTGATGTGCGTGATCGTGTACTGACCGC
TATTCGCGATGTTTCTCTTGATTTGTACAAGGGAGAGGTATTGGCTGTTGTTGGTGAGTCAGGCTCTGGCAAGTCTGTTT
TAACTAAGACATTTACAGGAATGCTGGAGGCAAATGGACGTGTTGCTTCAGGGACGATAACCTATGCGGGTCAAGAACTA
ACAGAGCTTAAAAATCATAAGGACTGGGAAGCTATTCGCGGCTCTAAAATTGCTACTATTTTCCAGGATCCAATGACTAG
TCTAGACCCGATTCAAACGATTGGTAGCCAGATTACTGAGGTTATTGTTAAGCATCAGAAAAAATCTAGATCAGAGGCTA
AGGCTTTAGCGATCGATTATATGACAAGGGTCGGTATTCCTGAGCCGGAAAAGCGCTTTGGAGAGTATCCTTTCCAATAT
TCTGGTGGTATGAGACAGCGTATCGTTATTGCCATTGCCCTAGCCTGTAAGCCAGATATTCTTATCTGTGATGAGCCGAC
AACAGCTCTTGACGTTACCATCCAGGCTCAGATTATTGATCTATTAAAGACGCTTCAAAAAGAGTATCACTTCACCATTA
TCTTTATCACGCATGACCTAGGAGTGGTTGCAAGTATTGCTGACAAGGTTGCTGTTATGTATGCAGGGGAGATTATCGAG
TATGGGAAGGTTGAAGAAATCTTCTATGATCCTCGTCACCCCTACACATGGAGCTTATTATCTAGCTTACCGCAATTGGC
AGATGAAAAGGGCGTTCTGTTTTCAATTCCGGGGACACCTCCGTCCTTGTATAAGCCGATTGTTGGGGATGCCTTTGCGC
CACGCTCTCAGTATGCTATGGCCATTGATTTTGAAGAAACAGTTCCTCGTTTTACGATCAGTGACACGCATTGGGCAAAA
ACTTGGCTGTTACATCCAGATGCACCTAAGGTTCAAAAGCCGGCTGTTATCCAAGATTTGCATCAAAAAATATTGAAAAA
AATGTCACGCCAGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

80

100

0.809
  amiE Streptococcus thermophilus LMG 18311

78.889

100

0.798
  amiE Streptococcus thermophilus LMD-9

78.889

100

0.798
  oppD Streptococcus mutans UA159

56.456

93.539

0.528

Multiple sequence alignment