Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   DQL35_RS09165 Genome accession   NZ_LS483325
Coordinates   1890789..1891715 (-) Length   308 a.a.
NCBI ID   WP_043030145.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC7022     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1885789..1896715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL35_RS09155 (NCTC7022_01850) amiF 1888794..1889717 (-) 924 WP_012516278.1 ATP-binding cassette domain-containing protein Regulator
  DQL35_RS09160 (NCTC7022_01851) amiE 1889710..1890780 (-) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  DQL35_RS09165 (NCTC7022_01852) amiD 1890789..1891715 (-) 927 WP_043030145.1 oligopeptide ABC transporter permease OppC Regulator
  DQL35_RS09170 (NCTC7022_01853) amiC 1891715..1893214 (-) 1500 WP_111678545.1 ABC transporter permease Regulator
  DQL35_RS09175 (NCTC7022_01854) amiA3 1893278..1895254 (-) 1977 WP_111678547.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34560.47 Da        Isoelectric Point: 7.1547

>NTDB_id=1136593 DQL35_RS09165 WP_043030145.1 1890789..1891715(-) (amiD) [Streptococcus equi subsp. zooepidemicus strain NCTC7022]
MAAIDKNKFTFVELDSYASEVIDAPAYSYWKSVFRQFFSRKSTILMLVILIAIILMSFIYPMFANYDFGDVSNINDFSKR
YIAPNAEYWFGTDQNGQSLFDGVWYGARNSILISVIATIINMIIGVVIGGIWGVSKAVDKVMIEVYNIISNLPQMLIIIV
LTYSIGAGFWNLIFAFCVTGWIGIAYSIRVQILRYRDLEYNLASQTLGTPTHKIVIKNLLPQLVSVIVSMVSLLLPSYIS
SEAFLSFFGLGLPITEPSLGRLISNYSNNLTTNAYLFWIPLTTLILVSLPLYIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1136593 DQL35_RS09165 WP_043030145.1 1890789..1891715(-) (amiD) [Streptococcus equi subsp. zooepidemicus strain NCTC7022]
ATGGCAGCAATTGACAAAAATAAATTCACCTTTGTTGAATTGGATAGCTATGCATCAGAAGTCATTGATGCCCCTGCTTA
CTCTTATTGGAAATCTGTCTTTAGGCAATTCTTCTCACGTAAATCAACTATTTTGATGCTGGTTATTTTAATTGCTATTA
TTTTGATGAGCTTCATCTATCCTATGTTTGCCAACTATGACTTTGGTGATGTGAGCAATATTAATGATTTTTCAAAGCGT
TATATCGCACCTAATGCAGAGTATTGGTTTGGTACGGATCAAAATGGTCAATCGCTCTTTGATGGTGTTTGGTATGGTGC
TAGAAATTCAATCTTAATTTCAGTCATTGCTACCATCATCAATATGATTATTGGAGTTGTTATTGGTGGTATTTGGGGTG
TTTCCAAGGCAGTTGATAAGGTAATGATTGAAGTGTATAATATCATCTCTAACCTGCCGCAAATGCTCATTATCATTGTA
TTGACTTATTCTATCGGAGCAGGCTTTTGGAACTTGATTTTTGCCTTTTGTGTGACAGGCTGGATTGGAATTGCTTATTC
GATTCGTGTACAAATTTTGCGTTATCGTGATCTAGAATACAATTTAGCAAGTCAGACCTTAGGAACACCCACCCATAAAA
TTGTCATTAAAAATCTTTTGCCTCAATTGGTTTCGGTGATCGTTTCGATGGTTTCCTTGCTGTTGCCGTCCTACATTTCA
TCAGAGGCCTTCTTATCCTTCTTTGGCTTGGGATTACCAATCACAGAACCAAGCTTGGGTCGATTAATTTCAAATTATTC
AAACAATTTAACAACGAATGCCTATTTATTCTGGATTCCATTGACAACTCTTATTCTTGTTTCCCTACCTTTATACATTG
TAGGACAAAACTTAGCAGATGCTAGTGATCCAAGGACGCATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

75.325

100

0.753
  amiD Streptococcus thermophilus LMG 18311

74.351

100

0.744
  amiD Streptococcus thermophilus LMD-9

74.351

100

0.744

Multiple sequence alignment