Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   JM183_RS06215 Genome accession   NZ_LR962863
Coordinates   1317922..1318245 (+) Length   107 a.a.
NCBI ID   WP_016425170.1    Uniprot ID   A0A7Z7QQ00
Organism   Staphylococcus schleiferi strain NCTC12218     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1312922..1323245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM183_RS06185 (NCTC12218_01314) - 1313706..1313912 (+) 207 WP_016425177.1 YqgQ family protein -
  JM183_RS06190 (NCTC12218_01315) - 1313905..1314891 (+) 987 WP_016425176.1 ROK family glucokinase -
  JM183_RS06195 (NCTC12218_01316) - 1314892..1315203 (+) 312 WP_016425175.1 MTH1187 family thiamine-binding protein -
  JM183_RS06200 (NCTC12218_01317) - 1315219..1315842 (+) 624 WP_016425174.1 MBL fold metallo-hydrolase -
  JM183_RS06205 (NCTC12218_01318) comGA 1315900..1316874 (+) 975 WP_126496312.1 competence type IV pilus ATPase ComGA Machinery gene
  JM183_RS06210 (NCTC12218_01319) comGB 1316843..1317910 (+) 1068 WP_126496310.1 competence type IV pilus assembly protein ComGB -
  JM183_RS06215 (NCTC12218_01320) comGC 1317922..1318245 (+) 324 WP_016425170.1 competence type IV pilus major pilin ComGC Machinery gene
  JM183_RS06220 (NCTC12218_01321) comGD 1318220..1318666 (+) 447 WP_016425169.1 competence type IV pilus minor pilin ComGD -
  JM183_RS06225 (NCTC12218_01322) - 1319012..1319344 (+) 333 WP_236744674.1 hypothetical protein -
  JM183_RS06230 - 1319508..1320035 (+) 528 WP_016425167.1 shikimate kinase -
  JM183_RS06235 (NCTC12218_01324) gcvT 1320195..1321286 (+) 1092 WP_016425166.1 glycine cleavage system aminomethyltransferase GcvT -
  JM183_RS06240 (NCTC12218_01325) gcvPA 1321299..1322648 (+) 1350 WP_016425165.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 11840.16 Da        Isoelectric Point: 9.1081

>NTDB_id=1134911 JM183_RS06215 WP_016425170.1 1317922..1318245(+) (comGC) [Staphylococcus schleiferi strain NCTC12218]
MLKNIMTKLLVKKGFTLIEMLLVLLIISVLLILIIPNIAKQSEHIQKTGCSAQLKMIDSQIEAYALKFNHKPATIDDLVR
EGYIKESQKQCKSGETISINAGEAVAS

Nucleotide


Download         Length: 324 bp        

>NTDB_id=1134911 JM183_RS06215 WP_016425170.1 1317922..1318245(+) (comGC) [Staphylococcus schleiferi strain NCTC12218]
ATGCTTAAAAATATAATGACAAAATTATTAGTAAAAAAAGGCTTTACACTCATAGAAATGCTACTCGTATTATTAATTAT
TAGTGTATTACTCATTTTAATCATTCCTAACATCGCTAAACAATCTGAGCACATTCAGAAGACAGGCTGTAGCGCTCAAT
TGAAAATGATAGATAGTCAAATCGAAGCTTATGCTTTGAAGTTCAATCACAAACCTGCAACGATTGATGATTTAGTTAGA
GAAGGCTATATTAAAGAAAGTCAAAAACAATGTAAATCTGGAGAAACGATTTCTATCAATGCAGGCGAAGCGGTTGCGTC
GTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z7QQ00

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

70.874

96.262

0.682
  comGC Staphylococcus aureus MW2

70.874

96.262

0.682
  comYC Streptococcus gordonii str. Challis substr. CH1

51.111

84.112

0.43
  comGC Bacillus subtilis subsp. subtilis str. 168

43.478

85.981

0.374
  comGC/cglC Streptococcus mitis NCTC 12261

42.105

88.785

0.374
  comGC/cglC Streptococcus mitis SK321

44.444

84.112

0.374
  comYC Streptococcus suis isolate S10

51.316

71.028

0.364

Multiple sequence alignment