Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   NMG84_RS19345 Genome accession   NZ_LR882963
Coordinates   4228626..4228994 (-) Length   122 a.a.
NCBI ID   WP_214560400.1    Uniprot ID   -
Organism   Planktothrix agardhii strain No.66     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4223626..4233994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMG84_RS19330 (PANO66_03866) dapA 4224755..4225642 (-) 888 WP_042154221.1 4-hydroxy-tetrahydrodipicolinate synthase -
  NMG84_RS19335 (PANO66_03867) - 4225695..4226723 (-) 1029 WP_042154219.1 aspartate-semialdehyde dehydrogenase -
  NMG84_RS19340 (PANO66_03868) tig 4227044..4228447 (+) 1404 WP_042157477.1 trigger factor -
  NMG84_RS19345 (PANO66_03869) pilH 4228626..4228994 (-) 369 WP_214560400.1 response regulator Machinery gene
  NMG84_RS19350 (PANO66_03870) purH 4229274..4230821 (+) 1548 WP_227350622.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  NMG84_RS19355 (PANO66_03871) - 4230907..4231536 (+) 630 WP_227365589.1 tetratricopeptide repeat protein -
  NMG84_RS19360 (PANO66_03872) - 4231634..4232413 (-) 780 WP_254032599.1 pentapeptide repeat-containing protein -
  NMG84_RS19365 (PANO66_03873) - 4232603..4233001 (+) 399 WP_042154207.1 hypothetical protein -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 13796.05 Da        Isoelectric Point: 4.5641

>NTDB_id=1132955 NMG84_RS19345 WP_214560400.1 4228626..4228994(-) (pilH) [Planktothrix agardhii strain No.66]
MTTVMIVDDSNALREIIAKMLQDSGMEVISAEDGVQALEKIEQVTQLDLVVLDIVMPNMNGYELCRQIKKNPKTQNIPVV
MCSSKSEDFDRIWGIRQGADAYISKPFRPEELLSTIKQLLPR

Nucleotide


Download         Length: 369 bp        

>NTDB_id=1132955 NMG84_RS19345 WP_214560400.1 4228626..4228994(-) (pilH) [Planktothrix agardhii strain No.66]
ATGACTACAGTGATGATTGTCGATGATAGCAACGCTCTCCGAGAGATAATTGCTAAGATGTTGCAAGACAGTGGGATGGA
GGTGATCTCAGCCGAAGATGGAGTTCAAGCCTTAGAAAAAATTGAACAGGTCACACAACTGGATTTAGTGGTATTAGATA
TTGTTATGCCCAATATGAACGGCTATGAGTTGTGTCGCCAGATTAAAAAAAATCCCAAAACCCAGAATATTCCCGTAGTT
ATGTGTTCTAGTAAAAGTGAGGACTTTGATCGCATCTGGGGAATCAGACAAGGGGCTGATGCCTATATTTCCAAACCTTT
CCGTCCCGAAGAACTGTTGAGTACAATAAAACAACTCCTACCGAGGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

63.333

98.361

0.623
  pilG Acinetobacter baumannii strain A118

45.217

94.262

0.426
  vicR Streptococcus mutans UA159

37.705

100

0.377
  micA Streptococcus pneumoniae Cp1015

37.705

100

0.377
  scnR Streptococcus mutans UA159

36.8

100

0.377
  chpA Acinetobacter baumannii strain A118

37.607

95.902

0.361

Multiple sequence alignment