Detailed information
Bioinformatically predicted
Overview
| Name | pilH | Type | Machinery gene |
| Locus tag | NMG88_RS15580 | Genome accession | NZ_LR882952 |
| Coordinates | 3321740..3322108 (-) | Length | 122 a.a. |
| NCBI ID | WP_214560400.1 | Uniprot ID | - |
| Organism | Planktothrix agardhii strain No.976 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3316740..3327108
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NMG88_RS15565 (NO976_03116) | dapA | 3317869..3318756 (-) | 888 | WP_026787650.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| NMG88_RS15570 (NO976_03117) | - | 3318809..3319837 (-) | 1029 | WP_042154219.1 | aspartate-semialdehyde dehydrogenase | - |
| NMG88_RS15575 (NO976_03118) | tig | 3320158..3321561 (+) | 1404 | WP_042157477.1 | trigger factor | - |
| NMG88_RS15580 (NO976_03119) | pilH | 3321740..3322108 (-) | 369 | WP_214560400.1 | response regulator | Machinery gene |
| NMG88_RS15585 (NO976_03120) | purH | 3322388..3323935 (+) | 1548 | WP_254035588.1 | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase | - |
| NMG88_RS15590 (NO976_03121) | - | 3324021..3324650 (+) | 630 | WP_227365589.1 | tetratricopeptide repeat protein | - |
| NMG88_RS15595 (NO976_03122) | - | 3324748..3325527 (-) | 780 | WP_235765792.1 | pentapeptide repeat-containing protein | - |
| NMG88_RS15600 (NO976_03123) | - | 3325717..3326115 (+) | 399 | WP_042154207.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 122 a.a. Molecular weight: 13796.05 Da Isoelectric Point: 4.5641
>NTDB_id=1132937 NMG88_RS15580 WP_214560400.1 3321740..3322108(-) (pilH) [Planktothrix agardhii strain No.976]
MTTVMIVDDSNALREIIAKMLQDSGMEVISAEDGVQALEKIEQVTQLDLVVLDIVMPNMNGYELCRQIKKNPKTQNIPVV
MCSSKSEDFDRIWGIRQGADAYISKPFRPEELLSTIKQLLPR
MTTVMIVDDSNALREIIAKMLQDSGMEVISAEDGVQALEKIEQVTQLDLVVLDIVMPNMNGYELCRQIKKNPKTQNIPVV
MCSSKSEDFDRIWGIRQGADAYISKPFRPEELLSTIKQLLPR
Nucleotide
Download Length: 369 bp
>NTDB_id=1132937 NMG88_RS15580 WP_214560400.1 3321740..3322108(-) (pilH) [Planktothrix agardhii strain No.976]
ATGACTACAGTGATGATTGTCGATGATAGCAACGCTCTCCGAGAGATAATTGCTAAGATGTTGCAAGACAGTGGGATGGA
GGTGATCTCAGCCGAAGATGGAGTTCAAGCCTTAGAAAAAATTGAACAGGTCACACAACTGGATTTAGTGGTATTAGATA
TTGTTATGCCCAATATGAACGGCTATGAGTTGTGTCGCCAGATTAAAAAAAATCCCAAAACCCAGAATATTCCCGTAGTT
ATGTGTTCTAGTAAAAGTGAGGACTTTGATCGCATCTGGGGAATCAGACAAGGGGCTGATGCCTATATTTCCAAACCTTT
CCGTCCCGAAGAACTGTTGAGTACAATAAAACAACTCCTACCGAGGTAG
ATGACTACAGTGATGATTGTCGATGATAGCAACGCTCTCCGAGAGATAATTGCTAAGATGTTGCAAGACAGTGGGATGGA
GGTGATCTCAGCCGAAGATGGAGTTCAAGCCTTAGAAAAAATTGAACAGGTCACACAACTGGATTTAGTGGTATTAGATA
TTGTTATGCCCAATATGAACGGCTATGAGTTGTGTCGCCAGATTAAAAAAAATCCCAAAACCCAGAATATTCCCGTAGTT
ATGTGTTCTAGTAAAAGTGAGGACTTTGATCGCATCTGGGGAATCAGACAAGGGGCTGATGCCTATATTTCCAAACCTTT
CCGTCCCGAAGAACTGTTGAGTACAATAAAACAACTCCTACCGAGGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilH | Synechocystis sp. PCC 6803 |
63.333 |
98.361 |
0.623 |
| pilG | Acinetobacter baumannii strain A118 |
45.217 |
94.262 |
0.426 |
| vicR | Streptococcus mutans UA159 |
37.705 |
100 |
0.377 |
| micA | Streptococcus pneumoniae Cp1015 |
37.705 |
100 |
0.377 |
| scnR | Streptococcus mutans UA159 |
36.8 |
100 |
0.377 |
| chpA | Acinetobacter baumannii strain A118 |
37.607 |
95.902 |
0.361 |