Detailed information
Bioinformatically predicted
Overview
| Name | pilH | Type | Machinery gene |
| Locus tag | NMG85_RS19415 | Genome accession | NZ_LR882950 |
| Coordinates | 4219597..4219965 (-) | Length | 122 a.a. |
| NCBI ID | WP_214560400.1 | Uniprot ID | - |
| Organism | Planktothrix agardhii strain PCC7805 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4214597..4224965
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NMG85_RS19400 (PCC7805_03891) | dapA | 4215726..4216613 (-) | 888 | WP_042154221.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| NMG85_RS19405 (PCC7805_03892) | - | 4216666..4217694 (-) | 1029 | WP_042154219.1 | aspartate-semialdehyde dehydrogenase | - |
| NMG85_RS19410 (PCC7805_03893) | tig | 4218015..4219418 (+) | 1404 | WP_042157477.1 | trigger factor | - |
| NMG85_RS19415 (PCC7805_03894) | pilH | 4219597..4219965 (-) | 369 | WP_214560400.1 | response regulator | Machinery gene |
| NMG85_RS19420 (PCC7805_03895) | purH | 4220245..4221792 (+) | 1548 | WP_235751491.1 | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase | - |
| NMG85_RS19425 (PCC7805_03896) | - | 4221878..4222507 (+) | 630 | WP_235751490.1 | tetratricopeptide repeat protein | - |
Sequence
Protein
Download Length: 122 a.a. Molecular weight: 13796.05 Da Isoelectric Point: 4.5641
>NTDB_id=1132922 NMG85_RS19415 WP_214560400.1 4219597..4219965(-) (pilH) [Planktothrix agardhii strain PCC7805]
MTTVMIVDDSNALREIIAKMLQDSGMEVISAEDGVQALEKIEQVTQLDLVVLDIVMPNMNGYELCRQIKKNPKTQNIPVV
MCSSKSEDFDRIWGIRQGADAYISKPFRPEELLSTIKQLLPR
MTTVMIVDDSNALREIIAKMLQDSGMEVISAEDGVQALEKIEQVTQLDLVVLDIVMPNMNGYELCRQIKKNPKTQNIPVV
MCSSKSEDFDRIWGIRQGADAYISKPFRPEELLSTIKQLLPR
Nucleotide
Download Length: 369 bp
>NTDB_id=1132922 NMG85_RS19415 WP_214560400.1 4219597..4219965(-) (pilH) [Planktothrix agardhii strain PCC7805]
ATGACTACAGTGATGATTGTCGATGATAGCAACGCTCTCCGAGAGATAATTGCTAAGATGTTGCAAGACAGTGGGATGGA
GGTGATCTCAGCCGAAGATGGAGTTCAAGCCTTAGAAAAAATTGAACAGGTCACACAACTGGATTTAGTGGTATTAGATA
TTGTTATGCCCAATATGAACGGCTATGAGTTGTGTCGCCAGATTAAAAAAAATCCCAAAACCCAGAATATTCCCGTAGTT
ATGTGTTCTAGTAAAAGTGAGGACTTTGATCGCATCTGGGGAATCAGACAAGGGGCTGATGCCTATATTTCCAAACCTTT
CCGTCCCGAAGAACTGTTGAGTACAATAAAACAACTCCTACCGAGGTAG
ATGACTACAGTGATGATTGTCGATGATAGCAACGCTCTCCGAGAGATAATTGCTAAGATGTTGCAAGACAGTGGGATGGA
GGTGATCTCAGCCGAAGATGGAGTTCAAGCCTTAGAAAAAATTGAACAGGTCACACAACTGGATTTAGTGGTATTAGATA
TTGTTATGCCCAATATGAACGGCTATGAGTTGTGTCGCCAGATTAAAAAAAATCCCAAAACCCAGAATATTCCCGTAGTT
ATGTGTTCTAGTAAAAGTGAGGACTTTGATCGCATCTGGGGAATCAGACAAGGGGCTGATGCCTATATTTCCAAACCTTT
CCGTCCCGAAGAACTGTTGAGTACAATAAAACAACTCCTACCGAGGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilH | Synechocystis sp. PCC 6803 |
63.333 |
98.361 |
0.623 |
| pilG | Acinetobacter baumannii strain A118 |
45.217 |
94.262 |
0.426 |
| vicR | Streptococcus mutans UA159 |
37.705 |
100 |
0.377 |
| micA | Streptococcus pneumoniae Cp1015 |
37.705 |
100 |
0.377 |
| scnR | Streptococcus mutans UA159 |
36.8 |
100 |
0.377 |
| chpA | Acinetobacter baumannii strain A118 |
37.607 |
95.902 |
0.361 |