Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   NMG87_RS21120 Genome accession   NZ_LR882944
Coordinates   4655752..4656120 (-) Length   122 a.a.
NCBI ID   WP_026787647.1    Uniprot ID   A0A479ZSQ9
Organism   Planktothrix agardhii strain No.365     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4650752..4661120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMG87_RS21105 (NO365_04238) - 4651270..4652298 (-) 1029 WP_026796489.1 aspartate-semialdehyde dehydrogenase -
  NMG87_RS21110 (NO365_04239) tig 4652619..4654016 (+) 1398 WP_254033993.1 trigger factor -
  NMG87_RS21115 (NO365_04240) - 4654442..4655560 (-) 1119 WP_254033994.1 hypothetical protein -
  NMG87_RS21120 (NO365_04241) pilH 4655752..4656120 (-) 369 WP_026787647.1 response regulator Machinery gene
  NMG87_RS21125 (NO365_04242) purH 4656342..4657889 (+) 1548 WP_254033995.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  NMG87_RS21130 (NO365_04243) - 4657975..4658604 (+) 630 WP_227365589.1 tetratricopeptide repeat protein -
  NMG87_RS21135 (NO365_04244) - 4658702..4659481 (-) 780 WP_235765792.1 pentapeptide repeat-containing protein -
  NMG87_RS21140 (NO365_04245) - 4659671..4660069 (+) 399 WP_042154207.1 hypothetical protein -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 13833.12 Da        Isoelectric Point: 4.9163

>NTDB_id=1132907 NMG87_RS21120 WP_026787647.1 4655752..4656120(-) (pilH) [Planktothrix agardhii strain No.365]
MTTVMIVDDSNALREIIAKMLRDSGMEVISAEDGVQALEKIEQVTQLDLVVLDIVMPNMNGYELCRHIKKNPKTQNIPVV
MCSSKSEDFDRIWGIRQGADAYISKPFRPEELLSTIKQLLPR

Nucleotide


Download         Length: 369 bp        

>NTDB_id=1132907 NMG87_RS21120 WP_026787647.1 4655752..4656120(-) (pilH) [Planktothrix agardhii strain No.365]
ATGACTACAGTGATGATTGTCGATGATAGCAACGCTCTCCGAGAGATAATTGCTAAGATGTTGCGAGACAGTGGGATGGA
GGTGATCTCAGCCGAAGATGGAGTTCAAGCCTTAGAAAAAATTGAACAGGTCACACAACTGGATTTAGTGGTATTAGATA
TTGTTATGCCCAATATGAACGGCTATGAGTTGTGTCGCCATATTAAAAAAAATCCCAAAACCCAGAATATTCCCGTAGTT
ATGTGTTCTAGTAAAAGTGAGGACTTTGATCGCATCTGGGGAATCAGACAAGGGGCTGATGCCTATATTTCCAAACCTTT
CCGTCCCGAAGAACTGTTGAGTACAATAAAACAACTCCTACCGAGGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A479ZSQ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

63.333

98.361

0.623
  pilG Acinetobacter baumannii strain A118

44.737

93.443

0.418
  vicR Streptococcus mutans UA159

37.705

100

0.377
  micA Streptococcus pneumoniae Cp1015

37.705

100

0.377
  scnR Streptococcus mutans UA159

36.8

100

0.377
  chpA Acinetobacter baumannii strain A118

37.607

95.902

0.361

Multiple sequence alignment