Detailed information
Bioinformatically predicted
Overview
| Name | pilH | Type | Machinery gene |
| Locus tag | NMG72_RS01035 | Genome accession | NZ_LR882938 |
| Coordinates | 228336..228704 (-) | Length | 122 a.a. |
| NCBI ID | WP_214560400.1 | Uniprot ID | - |
| Organism | Planktothrix agardhii strain No.2A | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 223336..233704
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NMG72_RS01020 (NO2A_00206) | dapA | 224465..225352 (-) | 888 | WP_042154221.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| NMG72_RS01025 (NO2A_00207) | - | 225405..226433 (-) | 1029 | WP_042154219.1 | aspartate-semialdehyde dehydrogenase | - |
| NMG72_RS01030 (NO2A_00208) | tig | 226754..228157 (+) | 1404 | WP_042157477.1 | trigger factor | - |
| NMG72_RS01035 (NO2A_00209) | pilH | 228336..228704 (-) | 369 | WP_214560400.1 | response regulator | Machinery gene |
| NMG72_RS01040 | purH | 228984..230532 (+) | 1549 | Protein_208 | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase | - |
| NMG72_RS01045 (NO2A_00212) | - | 230618..231247 (+) | 630 | WP_227365589.1 | tetratricopeptide repeat protein | - |
| NMG72_RS01050 (NO2A_00213) | - | 231344..232123 (-) | 780 | WP_227365591.1 | pentapeptide repeat-containing protein | - |
| NMG72_RS01055 (NO2A_00214) | - | 232313..232711 (+) | 399 | WP_042154207.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 122 a.a. Molecular weight: 13796.05 Da Isoelectric Point: 4.5641
>NTDB_id=1132877 NMG72_RS01035 WP_214560400.1 228336..228704(-) (pilH) [Planktothrix agardhii strain No.2A]
MTTVMIVDDSNALREIIAKMLQDSGMEVISAEDGVQALEKIEQVTQLDLVVLDIVMPNMNGYELCRQIKKNPKTQNIPVV
MCSSKSEDFDRIWGIRQGADAYISKPFRPEELLSTIKQLLPR
MTTVMIVDDSNALREIIAKMLQDSGMEVISAEDGVQALEKIEQVTQLDLVVLDIVMPNMNGYELCRQIKKNPKTQNIPVV
MCSSKSEDFDRIWGIRQGADAYISKPFRPEELLSTIKQLLPR
Nucleotide
Download Length: 369 bp
>NTDB_id=1132877 NMG72_RS01035 WP_214560400.1 228336..228704(-) (pilH) [Planktothrix agardhii strain No.2A]
ATGACTACAGTGATGATTGTCGATGATAGCAACGCTCTCCGAGAGATAATTGCTAAGATGTTGCAAGACAGTGGGATGGA
GGTGATCTCAGCCGAAGATGGAGTTCAAGCCTTAGAAAAAATTGAACAGGTCACACAACTGGATTTAGTGGTATTAGATA
TTGTTATGCCCAATATGAACGGCTATGAGTTGTGTCGCCAGATTAAAAAAAATCCCAAAACCCAGAATATTCCCGTAGTT
ATGTGTTCTAGTAAAAGTGAGGACTTTGATCGCATCTGGGGAATCAGACAAGGGGCTGATGCCTATATTTCCAAACCTTT
CCGTCCCGAAGAACTGTTGAGTACAATAAAACAACTCCTACCGAGGTAG
ATGACTACAGTGATGATTGTCGATGATAGCAACGCTCTCCGAGAGATAATTGCTAAGATGTTGCAAGACAGTGGGATGGA
GGTGATCTCAGCCGAAGATGGAGTTCAAGCCTTAGAAAAAATTGAACAGGTCACACAACTGGATTTAGTGGTATTAGATA
TTGTTATGCCCAATATGAACGGCTATGAGTTGTGTCGCCAGATTAAAAAAAATCCCAAAACCCAGAATATTCCCGTAGTT
ATGTGTTCTAGTAAAAGTGAGGACTTTGATCGCATCTGGGGAATCAGACAAGGGGCTGATGCCTATATTTCCAAACCTTT
CCGTCCCGAAGAACTGTTGAGTACAATAAAACAACTCCTACCGAGGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilH | Synechocystis sp. PCC 6803 |
63.333 |
98.361 |
0.623 |
| pilG | Acinetobacter baumannii strain A118 |
45.217 |
94.262 |
0.426 |
| vicR | Streptococcus mutans UA159 |
37.705 |
100 |
0.377 |
| micA | Streptococcus pneumoniae Cp1015 |
37.705 |
100 |
0.377 |
| scnR | Streptococcus mutans UA159 |
36.8 |
100 |
0.377 |
| chpA | Acinetobacter baumannii strain A118 |
37.607 |
95.902 |
0.361 |