Detailed information
Bioinformatically predicted
Overview
| Name | pilH | Type | Machinery gene |
| Locus tag | NMK38_RS16625 | Genome accession | NZ_LR882934 |
| Coordinates | 3603125..3603493 (-) | Length | 122 a.a. |
| NCBI ID | WP_042154217.1 | Uniprot ID | A0A073CFW0 |
| Organism | Planktothrix agardhii strain NIVA-CYA126/8 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 3598125..3608493
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NMK38_RS16610 (NIVACYA_03317) | dapA | 3599254..3600141 (-) | 888 | WP_042154221.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| NMK38_RS16615 (NIVACYA_03318) | - | 3600194..3601222 (-) | 1029 | WP_042154219.1 | aspartate-semialdehyde dehydrogenase | - |
| NMK38_RS16620 (NIVACYA_03319) | tig | 3601543..3602946 (+) | 1404 | WP_042157477.1 | trigger factor | - |
| NMK38_RS16625 (NIVACYA_03320) | pilH | 3603125..3603493 (-) | 369 | WP_042154217.1 | PleD family two-component system response regulator | Machinery gene |
| NMK38_RS16630 (NIVACYA_03321) | purH | 3603715..3605262 (+) | 1548 | WP_042154215.1 | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase | - |
| NMK38_RS16635 (NIVACYA_03322) | - | 3605348..3605977 (+) | 630 | WP_042154212.1 | tetratricopeptide repeat protein | - |
Sequence
Protein
Download Length: 122 a.a. Molecular weight: 13810.04 Da Isoelectric Point: 4.5641
>NTDB_id=1132873 NMK38_RS16625 WP_042154217.1 3603125..3603493(-) (pilH) [Planktothrix agardhii strain NIVA-CYA126/8]
MTTVMIVDDSNALREIIANMLRDSGMEVISAEDGVQALEKIEQVTQLDLVVLDIVMPNMNGYELCRQIKKNPKTQNIPVV
MCSSKSEDFDRIWGIRQGADAYISKPFRPEELLSTIKQLLPR
MTTVMIVDDSNALREIIANMLRDSGMEVISAEDGVQALEKIEQVTQLDLVVLDIVMPNMNGYELCRQIKKNPKTQNIPVV
MCSSKSEDFDRIWGIRQGADAYISKPFRPEELLSTIKQLLPR
Nucleotide
Download Length: 369 bp
>NTDB_id=1132873 NMK38_RS16625 WP_042154217.1 3603125..3603493(-) (pilH) [Planktothrix agardhii strain NIVA-CYA126/8]
ATGACTACAGTGATGATTGTCGATGATAGCAACGCTCTCCGAGAGATAATTGCTAATATGTTGCGAGACAGTGGGATGGA
GGTGATCTCAGCCGAAGATGGAGTTCAAGCCTTAGAAAAAATTGAACAGGTCACACAACTGGATTTAGTGGTATTAGATA
TTGTTATGCCCAATATGAACGGCTATGAGTTGTGTCGCCAGATTAAAAAAAATCCCAAAACCCAGAATATTCCCGTAGTT
ATGTGTTCTAGTAAAAGTGAGGACTTTGATCGCATCTGGGGAATCAGACAAGGGGCTGATGCCTATATTTCCAAACCTTT
CCGTCCCGAAGAACTGTTGAGTACAATAAAACAACTCCTACCGAGGTAG
ATGACTACAGTGATGATTGTCGATGATAGCAACGCTCTCCGAGAGATAATTGCTAATATGTTGCGAGACAGTGGGATGGA
GGTGATCTCAGCCGAAGATGGAGTTCAAGCCTTAGAAAAAATTGAACAGGTCACACAACTGGATTTAGTGGTATTAGATA
TTGTTATGCCCAATATGAACGGCTATGAGTTGTGTCGCCAGATTAAAAAAAATCCCAAAACCCAGAATATTCCCGTAGTT
ATGTGTTCTAGTAAAAGTGAGGACTTTGATCGCATCTGGGGAATCAGACAAGGGGCTGATGCCTATATTTCCAAACCTTT
CCGTCCCGAAGAACTGTTGAGTACAATAAAACAACTCCTACCGAGGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilH | Synechocystis sp. PCC 6803 |
63.333 |
98.361 |
0.623 |
| pilG | Acinetobacter baumannii strain A118 |
44.737 |
93.443 |
0.418 |
| vicR | Streptococcus mutans UA159 |
37.705 |
100 |
0.377 |
| micA | Streptococcus pneumoniae Cp1015 |
37.705 |
100 |
0.377 |
| scnR | Streptococcus mutans UA159 |
36.8 |
100 |
0.377 |
| chpA | Acinetobacter baumannii strain A118 |
37.607 |
95.902 |
0.361 |