Detailed information NTG1132320

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: H1W81_RS02080
• Genome accession: NZ_LR824002
• Coordinates: 382026..382463 (+)
• Length: 145 a.a.
• NCBI ID: WP_014608742.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus isolate STH_CIRM_67
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 377026..387463

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H1W81_RS02050 (STHERMO_0422)	-	378700..379062 (+)	363	WP_011226630.1	DUF1033 family protein	-
H1W81_RS02055 (STHERMO_0423)	comGA/cglA/cilD	379143..380084 (+)	942	WP_180484814.1	competence type IV pilus ATPase ComGA	Machinery gene
H1W81_RS02060 (STHERMO_0424)	comYB	379966..381066 (+)	1101	WP_375708571.1	competence type IV pilus assembly protein ComGB	Machinery gene
H1W81_RS02065 (STHERMO_0425)	comYC	381063..381389 (+)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
H1W81_RS02070 (STHERMO_0426)	comYD	381349..381777 (+)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
H1W81_RS02075 (STHERMO_0427)	comGE	381749..382042 (+)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
H1W81_RS02080 (STHERMO_0428)	comYF	382026..382463 (+)	438	WP_014608742.1	competence type IV pilus minor pilin ComGF	Machinery gene
H1W81_RS02085 (STHERMO_0429)	comGG	382441..382758 (+)	318	WP_011226623.1	competence type IV pilus minor pilin ComGG	-
H1W81_RS02090 (STHERMO_0430)	comYH	382803..383759 (+)	957	WP_011226622.1	class I SAM-dependent methyltransferase	Machinery gene
H1W81_RS02095 (STHERMO_0431)	-	383815..385008 (+)	1194	WP_022096898.1	acetate kinase	-
H1W81_RS02100 (STHERMO_0432)	-	385257..385454 (+)	198	WP_011681682.1	helix-turn-helix transcriptional regulator	-
H1W81_RS09365 (STHERMO_0434)	-	385697..386122 (+)	426	WP_041827107.1	CPBP family intramembrane glutamic endopeptidase	-
H1W81_RS02110 (STHERMO_0435)	-	386196..386644 (+)	449	Protein_360	CAAX protease	-
H1W81_RS02115 (STHERMO_0437)	-	386747..387409 (+)	663	WP_179971686.1	CPBP family intramembrane glutamic endopeptidase	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16505.05 Da
• Isoelectric Point: 8.9784

>NTDB_id=1132320 H1W81_RS02080 WP_014608742.1 382026..382463(+) (comYF) [Streptococcus thermophilus isolate STH_CIRM_67]
MYLSSKLRAFTLLECLVALLVIAGSVQVYQGLTTVLVSNVKQVRQQENQDWLLFVQQMEAELEGCQLVKVEWNKLYVKKD
NQDLAFGLSSASDFRKTNADGRGYQPMLFDVKSSKVSQKNQIVTIQVTLKNELQRSFVYAFEKTG

Nucleotide

• Length: 438 bp

>NTDB_id=1132320 H1W81_RS02080 WP_014608742.1 382026..382463(+) (comYF) [Streptococcus thermophilus isolate STH_CIRM_67]
ATGTATCTAAGCAGTAAGCTGCGTGCCTTTACCCTCTTGGAATGTCTAGTGGCCTTGTTGGTCATTGCTGGCTCAGTTCA
AGTTTATCAAGGGTTAACCACTGTACTTGTGAGTAATGTTAAGCAGGTAAGACAACAAGAAAACCAAGATTGGCTTCTAT
TTGTTCAACAAATGGAGGCAGAATTAGAAGGATGTCAGTTGGTCAAGGTAGAGTGGAACAAACTCTATGTCAAGAAGGAT
AATCAAGACTTGGCTTTTGGTCTTTCAAGTGCCTCTGATTTTCGAAAAACAAATGCTGATGGTCGAGGTTATCAACCAAT
GCTTTTCGATGTCAAATCTAGTAAGGTAAGTCAAAAGAACCAGATAGTTACCATCCAAGTGACTCTTAAAAATGAACTAC
AAAGGAGTTTTGTTTATGCTTTTGAAAAAACAGGTTAG

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (39-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	58.865	97.241	0.572
comYF	Streptococcus mutans UA159	58.156	97.241	0.566
comGF/cglF	Streptococcus pneumoniae D39	47.857	96.552	0.462
comGF/cglF	Streptococcus pneumoniae Rx1	47.857	96.552	0.462
comGF/cglF	Streptococcus pneumoniae R6	47.857	96.552	0.462
comGF/cglF	Streptococcus pneumoniae TIGR4	47.857	96.552	0.462
comGF/cglF	Streptococcus mitis NCTC 12261	46.099	97.241	0.448
comGF/cglF	Streptococcus mitis SK321	45.39	97.241	0.441
comGF	Lactococcus lactis subsp. cremoris KW2	46.043	95.862	0.441