Detailed information NTG1131966

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: H1W92_RS08730
• Genome accession: NZ_LR822039
• Coordinates: 1665440..1665868 (-)
• Length: 142 a.a.
• NCBI ID: WP_011226626.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus isolate STH_CIRM_1116
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1660440..1670868

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H1W92_RS08690 (STHERMO_1918)	-	1660573..1661021 (-)	449	Protein_1650	CAAX protease	-
H1W92_RS10010 (STHERMO_1919)	-	1661095..1661520 (-)	426	WP_041827107.1	CPBP family intramembrane glutamic endopeptidase	-
H1W92_RS08700 (STHERMO_1921)	-	1661763..1661960 (-)	198	WP_011681682.1	helix-turn-helix transcriptional regulator	-
H1W92_RS08705 (STHERMO_1922)	-	1662209..1663402 (-)	1194	WP_022096898.1	acetate kinase	-
H1W92_RS08710 (STHERMO_1923)	comYH	1663458..1664414 (-)	957	WP_011226622.1	class I SAM-dependent methyltransferase	Machinery gene
H1W92_RS08715 (STHERMO_1924)	comGG	1664459..1664776 (-)	318	WP_002952035.1	competence type IV pilus minor pilin ComGG	-
H1W92_RS08720 (STHERMO_1925)	comYF	1664754..1665191 (-)	438	WP_014608742.1	competence type IV pilus minor pilin ComGF	Machinery gene
H1W92_RS08725 (STHERMO_1926)	comGE	1665175..1665468 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
H1W92_RS08730 (STHERMO_1927)	comYD	1665440..1665868 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
H1W92_RS08735 (STHERMO_1928)	comYC	1665828..1666154 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
H1W92_RS08740 (STHERMO_1929)	comYB	1666151..1667251 (-)	1101	WP_148148900.1	competence type IV pilus assembly protein ComGB	Machinery gene
H1W92_RS08745 (STHERMO_1930)	comGA/cglA/cilD	1667133..1668074 (-)	942	WP_011226629.1	competence type IV pilus ATPase ComGA	Machinery gene
H1W92_RS08750 (STHERMO_1931)	-	1668155..1668517 (-)	363	WP_011226630.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15859.45 Da
• Isoelectric Point: 10.3330

>NTDB_id=1131966 H1W92_RS08730 WP_011226626.1 1665440..1665868(-) (comYD) [Streptococcus thermophilus isolate STH_CIRM_1116]
MRNMVVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASAEGSNVELQLTKD
KVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKTIS

Nucleotide

• Length: 429 bp

>NTDB_id=1131966 H1W92_RS08730 WP_011226626.1 1665440..1665868(-) (comYD) [Streptococcus thermophilus isolate STH_CIRM_1116]
ATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGCCAATTAGAGCTTTCACCTTGTTGGAGAGCCTGATGACACTAGCAGT
GGTTGTCTTTCTCACTCTGAGTTTGTCAGGCTCAGTCACAGGTATTTTTCAGCAGGTCGAGATTAATCTTTTTTATCTGC
GTTTTGAGTACCTATATCGAGATAGTCAGCGCTTGGCATCAGCGGAAGGATCTAATGTTGAATTGCAGTTAACTAAGGAT
AAGGTTAGTAATGGAAGGTCTAGTCTGCTTATTCCTAAAAGTATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
TAAAGGAGGCAACTCTAGCCTCACGAAAATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCTGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGATCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	52.672	92.254	0.486
comYD	Streptococcus mutans UA159	52.672	92.254	0.486
comYD	Streptococcus gordonii str. Challis substr. CH1	41.429	98.592	0.408
comGD/cglD	Streptococcus pneumoniae Rx1	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae D39	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae R6	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis NCTC 12261	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae TIGR4	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis SK321	43.307	89.437	0.387
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38