Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   H1W92_RS08710 Genome accession   NZ_LR822039
Coordinates   1663458..1664414 (-) Length   318 a.a.
NCBI ID   WP_011226622.1    Uniprot ID   A0A8D6XRE9
Organism   Streptococcus thermophilus isolate STH_CIRM_1116     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1658458..1669414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W92_RS08680 (STHERMO_1915) proC 1659008..1659778 (+) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -
  H1W92_RS08685 (STHERMO_1916) - 1659808..1660470 (-) 663 WP_011227583.1 CPBP family intramembrane glutamic endopeptidase -
  H1W92_RS08690 (STHERMO_1918) - 1660573..1661021 (-) 449 Protein_1650 CAAX protease -
  H1W92_RS10010 (STHERMO_1919) - 1661095..1661520 (-) 426 WP_041827107.1 CPBP family intramembrane glutamic endopeptidase -
  H1W92_RS08700 (STHERMO_1921) - 1661763..1661960 (-) 198 WP_011681682.1 helix-turn-helix transcriptional regulator -
  H1W92_RS08705 (STHERMO_1922) - 1662209..1663402 (-) 1194 WP_022096898.1 acetate kinase -
  H1W92_RS08710 (STHERMO_1923) comYH 1663458..1664414 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  H1W92_RS08715 (STHERMO_1924) comGG 1664459..1664776 (-) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG -
  H1W92_RS08720 (STHERMO_1925) comYF 1664754..1665191 (-) 438 WP_014608742.1 competence type IV pilus minor pilin ComGF Machinery gene
  H1W92_RS08725 (STHERMO_1926) comGE 1665175..1665468 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  H1W92_RS08730 (STHERMO_1927) comYD 1665440..1665868 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  H1W92_RS08735 (STHERMO_1928) comYC 1665828..1666154 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  H1W92_RS08740 (STHERMO_1929) comYB 1666151..1667251 (-) 1101 WP_148148900.1 competence type IV pilus assembly protein ComGB Machinery gene
  H1W92_RS08745 (STHERMO_1930) comGA/cglA/cilD 1667133..1668074 (-) 942 WP_011226629.1 competence type IV pilus ATPase ComGA Machinery gene
  H1W92_RS08750 (STHERMO_1931) - 1668155..1668517 (-) 363 WP_011226630.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35857.00 Da        Isoelectric Point: 4.7123

>NTDB_id=1131964 H1W92_RS08710 WP_011226622.1 1663458..1664414(-) (comYH) [Streptococcus thermophilus isolate STH_CIRM_1116]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=1131964 H1W92_RS08710 WP_011226622.1 1663458..1664414(-) (comYH) [Streptococcus thermophilus isolate STH_CIRM_1116]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682

Multiple sequence alignment