Detailed information NTG1131791

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: H1X38_RS08800
• Genome accession: NZ_LR822035
• Coordinates: 1705821..1706249 (-)
• Length: 142 a.a.
• NCBI ID: WP_011226626.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus isolate STH_CIRM_1051
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1700821..1711249

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H1X38_RS08760 (STHERMO_1969)	-	1700959..1701402 (-)	444	WP_041829335.1	hypothetical protein	-
H1X38_RS10150 (STHERMO_1970)	-	1701476..1701895 (-)	420	WP_014727721.1	CPBP family intramembrane glutamic endopeptidase	-
H1X38_RS08770 (STHERMO_1972)	-	1702144..1702341 (-)	198	WP_014727723.1	helix-turn-helix transcriptional regulator	-
H1X38_RS08775 (STHERMO_1973)	-	1702590..1703783 (-)	1194	WP_180484888.1	acetate kinase	-
H1X38_RS08780 (STHERMO_1974)	comYH	1703839..1704795 (-)	957	WP_011226622.1	class I SAM-dependent methyltransferase	Machinery gene
H1X38_RS08785 (STHERMO_1975)	comGG	1704840..1705157 (-)	318	WP_002952035.1	competence type IV pilus minor pilin ComGG	-
H1X38_RS08790 (STHERMO_1976)	comYF	1705135..1705572 (-)	438	WP_014608742.1	competence type IV pilus minor pilin ComGF	Machinery gene
H1X38_RS08795 (STHERMO_1977)	comGE	1705556..1705849 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
H1X38_RS08800 (STHERMO_1978)	comYD	1705821..1706249 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
H1X38_RS08805 (STHERMO_1979)	comYC	1706209..1706535 (-)	327	WP_014727724.1	competence type IV pilus major pilin ComGC	Machinery gene
H1X38_RS08810 (STHERMO_1980)	comYB	1706532..1707632 (-)	1101	WP_116920398.1	competence type IV pilus assembly protein ComGB	Machinery gene
H1X38_RS08815 (STHERMO_1981)	comGA/cglA/cilD	1707514..1708455 (-)	942	WP_014727726.1	competence type IV pilus ATPase ComGA	Machinery gene
H1X38_RS08820 (STHERMO_1982)	-	1708536..1708898 (-)	363	WP_014608746.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15859.45 Da
• Isoelectric Point: 10.3330

>NTDB_id=1131791 H1X38_RS08800 WP_011226626.1 1705821..1706249(-) (comYD) [Streptococcus thermophilus isolate STH_CIRM_1051]
MRNMVVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASAEGSNVELQLTKD
KVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKTIS

Nucleotide

• Length: 429 bp

>NTDB_id=1131791 H1X38_RS08800 WP_011226626.1 1705821..1706249(-) (comYD) [Streptococcus thermophilus isolate STH_CIRM_1051]
ATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGCCAATTAGAGCTTTCACCTTGTTGGAGAGCCTGATGACACTAGCAGT
GGTTGTCTTTCTCACTCTGAGTTTGTCAGGCTCAGTCACAGGTATTTTTCAGCAGGTCGAGATTAATCTTTTTTATCTGC
GTTTTGAGTACCTATATCGAGATAGTCAGCGCTTGGCATCAGCGGAAGGATCTAATGTTGAATTGCAGTTAACTAAGGAT
AAGGTCAGTAATGGAAGGTCTAGTCTGCTTATTCCTAAAAGTATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
TAAAGGAGGCAACTCTAGCCTCACGAAAATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCTGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGATCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	52.672	92.254	0.486
comYD	Streptococcus mutans UA159	52.672	92.254	0.486
comYD	Streptococcus gordonii str. Challis substr. CH1	41.429	98.592	0.408
comGD/cglD	Streptococcus pneumoniae Rx1	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae D39	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae R6	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis NCTC 12261	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae TIGR4	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis SK321	43.307	89.437	0.387
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38