Detailed information NTG1131790

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: H1X38_RS08790
• Genome accession: NZ_LR822035
• Coordinates: 1705135..1705572 (-)
• Length: 145 a.a.
• NCBI ID: WP_014608742.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus isolate STH_CIRM_1051
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1700135..1710572

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H1X38_RS08755 (STHERMO_1968)	-	1700200..1700862 (-)	663	WP_014727719.1	CPBP family intramembrane glutamic endopeptidase	-
H1X38_RS08760 (STHERMO_1969)	-	1700959..1701402 (-)	444	WP_041829335.1	hypothetical protein	-
H1X38_RS10150 (STHERMO_1970)	-	1701476..1701895 (-)	420	WP_014727721.1	CPBP family intramembrane glutamic endopeptidase	-
H1X38_RS08770 (STHERMO_1972)	-	1702144..1702341 (-)	198	WP_014727723.1	helix-turn-helix transcriptional regulator	-
H1X38_RS08775 (STHERMO_1973)	-	1702590..1703783 (-)	1194	WP_180484888.1	acetate kinase	-
H1X38_RS08780 (STHERMO_1974)	comYH	1703839..1704795 (-)	957	WP_011226622.1	class I SAM-dependent methyltransferase	Machinery gene
H1X38_RS08785 (STHERMO_1975)	comGG	1704840..1705157 (-)	318	WP_002952035.1	competence type IV pilus minor pilin ComGG	-
H1X38_RS08790 (STHERMO_1976)	comYF	1705135..1705572 (-)	438	WP_014608742.1	competence type IV pilus minor pilin ComGF	Machinery gene
H1X38_RS08795 (STHERMO_1977)	comGE	1705556..1705849 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
H1X38_RS08800 (STHERMO_1978)	comYD	1705821..1706249 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
H1X38_RS08805 (STHERMO_1979)	comYC	1706209..1706535 (-)	327	WP_014727724.1	competence type IV pilus major pilin ComGC	Machinery gene
H1X38_RS08810 (STHERMO_1980)	comYB	1706532..1707632 (-)	1101	WP_116920398.1	competence type IV pilus assembly protein ComGB	Machinery gene
H1X38_RS08815 (STHERMO_1981)	comGA/cglA/cilD	1707514..1708455 (-)	942	WP_014727726.1	competence type IV pilus ATPase ComGA	Machinery gene
H1X38_RS08820 (STHERMO_1982)	-	1708536..1708898 (-)	363	WP_014608746.1	DUF1033 family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16505.05 Da
• Isoelectric Point: 8.9784

>NTDB_id=1131790 H1X38_RS08790 WP_014608742.1 1705135..1705572(-) (comYF) [Streptococcus thermophilus isolate STH_CIRM_1051]
MYLSSKLRAFTLLECLVALLVIAGSVQVYQGLTTVLVSNVKQVRQQENQDWLLFVQQMEAELEGCQLVKVEWNKLYVKKD
NQDLAFGLSSASDFRKTNADGRGYQPMLFDVKSSKVSQKNQIVTIQVTLKNELQRSFVYAFEKTG

Nucleotide

• Length: 438 bp

>NTDB_id=1131790 H1X38_RS08790 WP_014608742.1 1705135..1705572(-) (comYF) [Streptococcus thermophilus isolate STH_CIRM_1051]
ATGTATCTAAGCAGTAAGCTGCGTGCCTTTACCCTCTTGGAATGTCTAGTGGCCTTGTTGGTCATTGCTGGCTCAGTTCA
AGTTTATCAAGGGTTAACCACTGTACTTGTGAGTAATGTTAAGCAGGTAAGACAACAAGAAAACCAAGATTGGCTTCTAT
TTGTTCAACAAATGGAGGCAGAATTAGAAGGATGTCAGTTGGTCAAGGTAGAGTGGAACAAACTCTATGTCAAGAAGGAT
AATCAAGACTTGGCTTTTGGTCTTTCAAGTGCCTCTGATTTTCGAAAAACAAATGCTGATGGTCGAGGTTATCAACCAAT
GCTTTTCGATGTCAAATCTAGTAAGGTAAGTCAAAAGAACCAGATAGTTACCATCCAAGTGACTCTTAAAAATGAACTAC
AAAGGAGTTTTGTTTATGCTTTTGAAAAAACAGGTTAG

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (39-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	58.865	97.241	0.572
comYF	Streptococcus mutans UA159	58.156	97.241	0.566
comGF/cglF	Streptococcus pneumoniae D39	47.857	96.552	0.462
comGF/cglF	Streptococcus pneumoniae Rx1	47.857	96.552	0.462
comGF/cglF	Streptococcus pneumoniae R6	47.857	96.552	0.462
comGF/cglF	Streptococcus pneumoniae TIGR4	47.857	96.552	0.462
comGF/cglF	Streptococcus mitis NCTC 12261	46.099	97.241	0.448
comGF/cglF	Streptococcus mitis SK321	45.39	97.241	0.441
comGF	Lactococcus lactis subsp. cremoris KW2	46.043	95.862	0.441