Detailed information
Bioinformatically predicted
Overview
| Name | comR | Type | Regulator |
| Locus tag | H1X13_RS01390 | Genome accession | NZ_LR822034 |
| Coordinates | 257540..258439 (+) | Length | 299 a.a. |
| NCBI ID | WP_011225448.1 | Uniprot ID | Q5M612 |
| Organism | Streptococcus thermophilus isolate STH_CIRM_1049 | ||
| Function | activate transcription of comX; activate transcription of comS (predicted from homology) Competence regulation |
||
Genomic Context
Location: 252540..263439
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H1X13_RS01370 (STHERMO_0286) | trkA | 253677..255026 (-) | 1350 | WP_011225444.1 | Trk system potassium transporter TrkA | - |
| H1X13_RS01375 (STHERMO_0287) | - | 255284..255823 (+) | 540 | WP_372585740.1 | tRNA (cytidine(34)-2'-O)-methyltransferase | - |
| H1X13_RS01380 (STHERMO_0288) | - | 256135..256692 (+) | 558 | WP_002949523.1 | ECF transporter S component | - |
| H1X13_RS01385 (STHERMO_0289) | - | 256695..257345 (+) | 651 | WP_011225447.1 | phosphatase PAP2 family protein | - |
| H1X13_RS01390 (STHERMO_0291) | comR | 257540..258439 (+) | 900 | WP_011225448.1 | helix-turn-helix domain-containing protein | Regulator |
| H1X13_RS09670 (STHERMO_0293) | - | 258677..259855 (+) | 1179 | Protein_235 | ABC transporter transmembrane domain-containing protein | - |
| H1X13_RS09810 (STHERMO_0295) | comA | 259877..260086 (+) | 210 | WP_002946147.1 | hypothetical protein | Regulator |
| H1X13_RS01410 (STHERMO_0297) | - | 260141..260709 (+) | 569 | Protein_237 | ATP-binding cassette domain-containing protein | - |
| H1X13_RS01415 (STHERMO_0298) | - | 260817..261128 (+) | 312 | WP_022096570.1 | DUF805 domain-containing protein | - |
| H1X13_RS09815 (STHERMO_0299) | - | 261096..261380 (-) | 285 | WP_232085805.1 | hypothetical protein | - |
| H1X13_RS10365 | - | 261349..261696 (-) | 348 | WP_232089310.1 | DUF4173 domain-containing protein | - |
| H1X13_RS09820 (STHERMO_0301) | - | 261621..262517 (-) | 897 | WP_224103642.1 | urease cluster protein | - |
| H1X13_RS01425 (STHERMO_0302) | - | 262922..263437 (+) | 516 | WP_002949547.1 | AmiS/UreI family transporter | - |
Sequence
Protein
Download Length: 299 a.a. Molecular weight: 35303.77 Da Isoelectric Point: 5.1073
>NTDB_id=1131688 H1X13_RS01390 WP_011225448.1 257540..258439(+) (comR) [Streptococcus thermophilus isolate STH_CIRM_1049]
MNIKDSIGLRIKTERERQQMSREVLCLDGAELTVRQLIRIEKGESLPSLDRLSYIAKRLGKSMTELLDQDNITIPDEYYE
MKNRLIKFPTYRNPDRIKSKLTLIEEVYEKFFDILPEEELLTLDILENILSFTSWEESPKVEEIYEDLFEQVKRKRKFST
NDLLVIDYYFFHLYGRKQYDKKLFERIIKRVLNQEIWTDDVYNIVLFNDLMAIAALKIFHNSFSDFLTVVDKALAVIEKS
QLYSYKPSVFVLKAKYELLHKENKKEAAENYDKAIMFASVLEDSVLEESIKAGKLADGL
MNIKDSIGLRIKTERERQQMSREVLCLDGAELTVRQLIRIEKGESLPSLDRLSYIAKRLGKSMTELLDQDNITIPDEYYE
MKNRLIKFPTYRNPDRIKSKLTLIEEVYEKFFDILPEEELLTLDILENILSFTSWEESPKVEEIYEDLFEQVKRKRKFST
NDLLVIDYYFFHLYGRKQYDKKLFERIIKRVLNQEIWTDDVYNIVLFNDLMAIAALKIFHNSFSDFLTVVDKALAVIEKS
QLYSYKPSVFVLKAKYELLHKENKKEAAENYDKAIMFASVLEDSVLEESIKAGKLADGL
Nucleotide
Download Length: 900 bp
>NTDB_id=1131688 H1X13_RS01390 WP_011225448.1 257540..258439(+) (comR) [Streptococcus thermophilus isolate STH_CIRM_1049]
TTGAACATAAAAGACAGCATTGGACTAAGAATCAAAACTGAGCGTGAACGCCAACAGATGTCACGTGAAGTGCTATGTTT
AGATGGTGCGGAATTGACTGTTCGCCAGTTAATTCGTATTGAAAAGGGGGAGTCTCTCCCGTCTTTAGATAGATTATCGT
ATATTGCTAAACGTTTAGGAAAAAGTATGACAGAGTTATTGGATCAAGACAATATTACCATTCCTGACGAATATTATGAA
ATGAAGAATCGTTTGATTAAGTTTCCAACGTACAGAAACCCTGACAGAATAAAGTCTAAACTTACTTTGATTGAGGAAGT
CTATGAGAAATTTTTTGATATTCTTCCAGAAGAAGAATTATTAACTCTAGACATTCTCGAAAATATATTGAGTTTTACTA
GCTGGGAGGAGAGTCCAAAAGTTGAGGAGATATATGAAGACTTGTTTGAACAAGTCAAAAGGAAGAGGAAATTCTCAACT
AACGATTTATTAGTCATTGACTATTATTTCTTTCATCTTTATGGGAGAAAACAGTATGACAAAAAACTATTTGAAAGAAT
TATAAAGAGAGTATTAAATCAGGAAATTTGGACAGATGATGTTTACAATATTGTTTTATTTAATGATTTGATGGCTATTG
CTGCTTTAAAGATTTTTCACAATTCCTTCTCAGACTTCTTAACAGTTGTGGATAAAGCCTTAGCTGTCATAGAAAAATCA
CAATTATATAGCTACAAGCCTAGTGTTTTTGTACTTAAGGCTAAATATGAACTTCTGCATAAAGAAAACAAGAAAGAGGC
TGCAGAGAATTATGATAAGGCCATAATGTTTGCTTCCGTTTTGGAAGACTCGGTTTTAGAGGAAAGTATAAAGGCAGGAA
AATTGGCAGATGGTTTATAG
TTGAACATAAAAGACAGCATTGGACTAAGAATCAAAACTGAGCGTGAACGCCAACAGATGTCACGTGAAGTGCTATGTTT
AGATGGTGCGGAATTGACTGTTCGCCAGTTAATTCGTATTGAAAAGGGGGAGTCTCTCCCGTCTTTAGATAGATTATCGT
ATATTGCTAAACGTTTAGGAAAAAGTATGACAGAGTTATTGGATCAAGACAATATTACCATTCCTGACGAATATTATGAA
ATGAAGAATCGTTTGATTAAGTTTCCAACGTACAGAAACCCTGACAGAATAAAGTCTAAACTTACTTTGATTGAGGAAGT
CTATGAGAAATTTTTTGATATTCTTCCAGAAGAAGAATTATTAACTCTAGACATTCTCGAAAATATATTGAGTTTTACTA
GCTGGGAGGAGAGTCCAAAAGTTGAGGAGATATATGAAGACTTGTTTGAACAAGTCAAAAGGAAGAGGAAATTCTCAACT
AACGATTTATTAGTCATTGACTATTATTTCTTTCATCTTTATGGGAGAAAACAGTATGACAAAAAACTATTTGAAAGAAT
TATAAAGAGAGTATTAAATCAGGAAATTTGGACAGATGATGTTTACAATATTGTTTTATTTAATGATTTGATGGCTATTG
CTGCTTTAAAGATTTTTCACAATTCCTTCTCAGACTTCTTAACAGTTGTGGATAAAGCCTTAGCTGTCATAGAAAAATCA
CAATTATATAGCTACAAGCCTAGTGTTTTTGTACTTAAGGCTAAATATGAACTTCTGCATAAAGAAAACAAGAAAGAGGC
TGCAGAGAATTATGATAAGGCCATAATGTTTGCTTCCGTTTTGGAAGACTCGGTTTTAGAGGAAAGTATAAAGGCAGGAA
AATTGGCAGATGGTTTATAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comR | Streptococcus thermophilus LMG 18311 |
100 |
100 |
1 |
| comR | Streptococcus thermophilus LMD-9 |
99.331 |
100 |
0.993 |
| comR | Streptococcus salivarius strain HSISS4 |
95.318 |
100 |
0.953 |
| comR | Streptococcus salivarius SK126 |
94.649 |
100 |
0.946 |
| comR/comR1 | Streptococcus sobrinus strain NIDR 6715-7 |
42.14 |
100 |
0.421 |
| comR/comR2 | Streptococcus sobrinus strain NIDR 6715-7 |
42.14 |
100 |
0.421 |