Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | SANT_RS19705 | Genome accession | NZ_CP006569 |
| Coordinates | 4431224..4431760 (-) | Length | 178 a.a. |
| NCBI ID | WP_025423955.1 | Uniprot ID | - |
| Organism | Sodalis praecaptivus strain HS1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4426224..4436760
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SANT_RS19685 (Sant_3856) | - | 4426358..4427287 (+) | 930 | WP_158500170.1 | aliphatic sulfonate ABC transporter substrate-binding protein | - |
| SANT_RS19690 (Sant_3857) | - | 4427287..4427820 (+) | 534 | WP_025423952.1 | OsmC family protein | - |
| SANT_RS19695 (Sant_3858) | - | 4427826..4428923 (+) | 1098 | WP_025423953.1 | LLM class flavin-dependent oxidoreductase | - |
| SANT_RS19700 (Sant_3859) | - | 4429585..4430697 (+) | 1113 | WP_148296332.1 | hypothetical protein | - |
| SANT_RS19705 (Sant_3860) | ssb | 4431224..4431760 (-) | 537 | WP_025423955.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| SANT_RS19710 (Sant_3861) | uvrA | 4432005..4434848 (+) | 2844 | WP_025423956.1 | excinuclease ABC subunit UvrA | - |
| SANT_RS19720 (Sant_3862) | - | 4435492..4435845 (-) | 354 | WP_025423958.1 | MmcQ/YjbR family DNA-binding protein | - |
| SANT_RS19725 (Sant_3863) | - | 4435849..4436265 (-) | 417 | WP_025423959.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 18876.79 Da Isoelectric Point: 5.7627
>NTDB_id=113154 SANT_RS19705 WP_025423955.1 4431224..4431760(-) (ssb) [Sodalis praecaptivus strain HS1]
MASRGVNKVILVGNLGQDPEVRHMPNGGAVANITLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGTMQMLGGRQGGGAGGNAGGAQQGGWGQPQQPQGNNAQFSGGNAPAARPAQNS
APAPSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRHMPNGGAVANITLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGTMQMLGGRQGGGAGGNAGGAQQGGWGQPQQPQGNNAQFSGGNAPAARPAQNS
APAPSNEPPMDFDDDIPF
Nucleotide
Download Length: 537 bp
>NTDB_id=113154 SANT_RS19705 WP_025423955.1 4431224..4431760(-) (ssb) [Sodalis praecaptivus strain HS1]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTAGTCGGAAACCTGGGCCAGGATCCGGAAGTCCGCCATATGCCTAACGG
TGGTGCGGTAGCCAACATCACCCTGGCCACCTCTGAGAGCTGGCGCGACAAGCAGACCGGCGAGACCAAGGAGAAAACGG
AATGGCATCGCGTGGTGCTGTTTGGCAAGCTGGCCGAGGTGGCGGGTGAATATTTGCGTAAGGGCTCCCAGGTGTATATT
GAGGGATCGCTACAGACCCGCAAATGGCAAGATCAGAGCGGCCAGGATCGATACACCACCGAGGTGGTGGTCAATATCGG
CGGCACCATGCAAATGCTCGGCGGTCGACAGGGCGGCGGGGCGGGCGGTAACGCCGGTGGCGCGCAGCAGGGTGGCTGGG
GGCAGCCTCAGCAGCCGCAGGGCAATAACGCGCAGTTCAGCGGCGGCAACGCGCCGGCGGCGCGCCCCGCGCAGAACTCA
GCGCCTGCGCCCAGCAACGAACCGCCGATGGACTTCGATGACGATATTCCGTTCTAA
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTAGTCGGAAACCTGGGCCAGGATCCGGAAGTCCGCCATATGCCTAACGG
TGGTGCGGTAGCCAACATCACCCTGGCCACCTCTGAGAGCTGGCGCGACAAGCAGACCGGCGAGACCAAGGAGAAAACGG
AATGGCATCGCGTGGTGCTGTTTGGCAAGCTGGCCGAGGTGGCGGGTGAATATTTGCGTAAGGGCTCCCAGGTGTATATT
GAGGGATCGCTACAGACCCGCAAATGGCAAGATCAGAGCGGCCAGGATCGATACACCACCGAGGTGGTGGTCAATATCGG
CGGCACCATGCAAATGCTCGGCGGTCGACAGGGCGGCGGGGCGGGCGGTAACGCCGGTGGCGCGCAGCAGGGTGGCTGGG
GGCAGCCTCAGCAGCCGCAGGGCAATAACGCGCAGTTCAGCGGCGGCAACGCGCCGGCGGCGCGCCCCGCGCAGAACTCA
GCGCCTGCGCCCAGCAACGAACCGCCGATGGACTTCGATGACGATATTCCGTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
72.34 |
100 |
0.764 |
| ssb | Glaesserella parasuis strain SC1401 |
59.14 |
100 |
0.618 |
| ssb | Neisseria gonorrhoeae MS11 |
47.514 |
100 |
0.483 |
| ssb | Neisseria meningitidis MC58 |
46.961 |
100 |
0.478 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
36.517 |
100 |
0.365 |