Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   H1X08_RS03095 Genome accession   NZ_LR822025
Coordinates   599528..601504 (+) Length   658 a.a.
NCBI ID   WP_180482511.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_961     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 594528..606504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1X08_RS03070 - 595510..596629 (+) 1120 Protein_577 IS3 family transposase -
  H1X08_RS03075 (STHERMO_0672) - 596678..597883 (-) 1206 WP_180482510.1 OFA family MFS transporter -
  H1X08_RS11215 - 598206..598643 (+) 438 Protein_579 TatD family hydrolase -
  H1X08_RS11220 (STHERMO_0674) - 598683..599107 (+) 425 Protein_580 ATP-binding cassette domain-containing protein -
  H1X08_RS03090 (STHERMO_0676) - 599104..599293 (+) 190 Protein_581 IS3 family transposase -
  H1X08_RS03095 (STHERMO_0677) amiA3 599528..601504 (+) 1977 WP_180482511.1 peptide ABC transporter substrate-binding protein Regulator
  H1X08_RS03100 (STHERMO_0678) amiC 601570..603063 (+) 1494 WP_164135541.1 ABC transporter permease Regulator
  H1X08_RS03105 (STHERMO_0679) amiD 603063..603989 (+) 927 WP_180482512.1 oligopeptide ABC transporter permease OppC Regulator
  H1X08_RS03110 (STHERMO_0680) amiE 603999..605084 (+) 1086 WP_179972089.1 ABC transporter ATP-binding protein Regulator
  H1X08_RS03115 (STHERMO_0681) amiF 605077..606003 (+) 927 WP_179972088.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72413.63 Da        Isoelectric Point: 6.1419

>NTDB_id=1131198 H1X08_RS03095 WP_180482511.1 599528..601504(+) (amiA3) [Streptococcus thermophilus isolate STH_CIRM_961]
MKKSKWLALAGVALLGVGVLTACSSKSKSNTSGTTYGYVYSSDPETLDYITSNTGPTKTAVTNGVDGLMEADKYGNLVPS
VAEDWSVSKDGLTYTYKIRKGVKWYTSDGEEYANVTAKDFVTGLKHAADSKAGGIYLVQDSIAGLSDYLSGTNKDFSNVG
VKAIDDYTLQYTLRRPEPYWNSKTTYGLLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFLLKSLTAKSSIELVKNEHYWD
KKNVHFDAIKLSYYDGSDQDALVRGFTDGAYNIARVFPTSSNYASVEKKYKDNIYYTAPGASTSAIGINIDRQSYKYTAK
KTDSEKSSTKKALLNKDFRQAINFAIDRKAYQSQINGKDGATLGVRNLFVPSDFVSAGDKTFGDLVTNKMSSYGDEWSGV
NFADNQDGLYNAEKAKTEFAKAKDALKADGVQFPIHLDLPVDQSSKLNVAQAQSLKQTIEKSLGKDNVVIDINQLSSDDL
QNATLNAANAAAEDWDISNGVIWAPDYQDPSTYLDIFKTTSSESTKTFMGYDDPNNAAAVQVGLKDYDALLNSAASETSD
LNVRYDRYAQAQAWLEDSSLVIPLTVGNGAAPVISRLKPFTGASIQVGDKNSSDYLKYVKPQEKVVTKKEYEQSREKWLK
EKKESNEKAQKDLEKHVK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=1131198 H1X08_RS03095 WP_180482511.1 599528..601504(+) (amiA3) [Streptococcus thermophilus isolate STH_CIRM_961]
ATGAAAAAAAGCAAATGGTTGGCCCTCGCGGGTGTAGCACTTCTAGGTGTTGGTGTGTTAACGGCTTGTTCATCTAAATC
TAAATCAAACACTAGCGGAACTACTTATGGTTACGTTTACAGTTCGGATCCAGAAACTTTGGATTATATTACATCAAATA
CGGGACCTACAAAAACTGCTGTGACAAATGGCGTAGATGGACTTATGGAAGCGGACAAATATGGTAATCTTGTTCCATCA
GTAGCTGAAGATTGGTCTGTGTCTAAAGATGGTCTTACTTATACCTATAAAATTCGTAAAGGGGTCAAATGGTATACTTC
TGATGGTGAAGAGTACGCTAATGTTACTGCTAAGGACTTTGTTACGGGTCTTAAACATGCTGCGGACTCCAAAGCAGGTG
GTATCTATTTGGTTCAAGATTCTATTGCTGGATTGTCTGACTATCTCTCTGGTACCAATAAAGATTTCTCGAATGTGGGT
GTCAAGGCAATTGATGACTATACTTTGCAGTACACGCTTAGGCGACCAGAACCATACTGGAACTCTAAGACAACTTATGG
TTTGCTTTTCCCAGTAAATGAAGACTTCCTCAAGAATAAGGGAAAAGATTTTGGTAAATCAACAGACCCAACCTCTATCC
TTTATAATGGACCTTTCCTTCTCAAATCTTTGACAGCTAAATCTTCAATTGAGTTGGTTAAGAATGAACATTATTGGGAC
AAGAAAAATGTACACTTTGATGCTATCAAATTATCATATTATGATGGTTCGGATCAAGATGCTCTAGTACGTGGTTTCAC
TGATGGTGCTTATAATATTGCTCGTGTCTTTCCAACGAGTTCAAACTATGCTTCTGTAGAGAAGAAATATAAAGATAATA
TTTATTACACAGCACCAGGTGCGTCTACATCAGCTATTGGTATTAATATTGACCGTCAAAGTTACAAGTATACAGCCAAA
AAGACGGATTCTGAAAAATCATCAACCAAGAAAGCCCTTCTAAACAAGGACTTCCGTCAAGCAATTAACTTTGCCATTGA
CCGTAAGGCCTATCAATCACAAATTAACGGTAAAGATGGTGCAACTCTAGGTGTTCGTAACCTCTTTGTGCCTTCTGATT
TTGTGAGTGCAGGTGATAAGACCTTCGGAGATCTTGTAACGAATAAAATGTCTTCATATGGGGATGAATGGTCAGGTGTG
AATTTTGCTGATAATCAAGATGGCCTCTACAATGCTGAAAAAGCTAAGACTGAGTTTGCCAAAGCTAAGGATGCTCTCAA
AGCAGATGGTGTTCAATTCCCAATTCATTTGGACCTTCCAGTTGACCAAAGTTCTAAACTTAATGTTGCCCAAGCCCAAT
CTTTGAAACAAACCATTGAAAAATCATTGGGAAAGGACAATGTGGTGATTGATATTAACCAATTGTCATCTGATGATTTG
CAAAATGCAACCCTTAATGCCGCCAACGCAGCAGCAGAAGACTGGGATATTTCAAATGGTGTCATTTGGGCGCCAGATTA
CCAAGATCCATCAACCTACCTTGATATCTTTAAGACAACTTCAAGTGAAAGCACTAAGACTTTCATGGGTTATGATGATC
CAAATAATGCGGCAGCAGTCCAAGTAGGACTCAAAGACTATGATGCCTTGCTTAATTCTGCAGCTTCAGAAACAAGTGAC
CTTAATGTTCGTTATGATCGTTATGCTCAAGCTCAAGCATGGTTGGAGGACAGTTCGCTTGTGATTCCATTGACTGTTGG
TAATGGTGCGGCACCAGTTATCTCACGCTTGAAACCGTTTACCGGTGCTAGCATCCAGGTGGGTGATAAAAACTCATCAG
ACTACTTAAAATATGTGAAACCACAAGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAA
GAAAAGAAAGAATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

95.296

100

0.954
  amiA3 Streptococcus thermophilus LMG 18311

95.144

100

0.953
  amiA Streptococcus salivarius strain HSISS4

90.729

100

0.907

Multiple sequence alignment