Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   H1X08_RS03100 Genome accession   NZ_LR822025
Coordinates   601570..603063 (+) Length   497 a.a.
NCBI ID   WP_164135541.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_961     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 596570..608063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1X08_RS03075 (STHERMO_0672) - 596678..597883 (-) 1206 WP_180482510.1 OFA family MFS transporter -
  H1X08_RS11215 - 598206..598643 (+) 438 Protein_579 TatD family hydrolase -
  H1X08_RS11220 (STHERMO_0674) - 598683..599107 (+) 425 Protein_580 ATP-binding cassette domain-containing protein -
  H1X08_RS03090 (STHERMO_0676) - 599104..599293 (+) 190 Protein_581 IS3 family transposase -
  H1X08_RS03095 (STHERMO_0677) amiA3 599528..601504 (+) 1977 WP_180482511.1 peptide ABC transporter substrate-binding protein Regulator
  H1X08_RS03100 (STHERMO_0678) amiC 601570..603063 (+) 1494 WP_164135541.1 ABC transporter permease Regulator
  H1X08_RS03105 (STHERMO_0679) amiD 603063..603989 (+) 927 WP_180482512.1 oligopeptide ABC transporter permease OppC Regulator
  H1X08_RS03110 (STHERMO_0680) amiE 603999..605084 (+) 1086 WP_179972089.1 ABC transporter ATP-binding protein Regulator
  H1X08_RS03115 (STHERMO_0681) amiF 605077..606003 (+) 927 WP_179972088.1 ATP-binding cassette domain-containing protein Regulator
  H1X08_RS03120 (STHERMO_0682) - 606056..606841 (-) 786 WP_180482513.1 ABC transporter permease -
  H1X08_RS03125 (STHERMO_0684) - 606853..607553 (-) 701 Protein_588 ABC transporter ATP-binding protein -
  H1X08_RS03130 (STHERMO_0685) - 607558..607935 (-) 378 WP_180482514.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55816.60 Da        Isoelectric Point: 10.0391

>NTDB_id=1131199 H1X08_RS03100 WP_164135541.1 601570..603063(+) (amiC) [Streptococcus thermophilus isolate STH_CIRM_961]
MKRYILLRTLRSILSIFVVTALTYTIIYTMVPRHLIFRQDPNYNKIAKTADSKTNYENTIFERMGYIDYYDTKELQENAS
TLDKSVTTKPTKANKAIYQKYVDSLGHGWRLHQFKQSKQFYATRDVPVLERVFEFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFVHQNFVKMNLGTSYPTYAGQGVLDVITQGQGQTKSSVVNFPTGKRISSV
DIYSRTYKSPSQADARDRSYYGDDPYTSTKNRYQDPSMVTSSAIAGLIGLVLSYALAIPLGSYMARFKNTLFDSVLTGIL
TFLLSLPTIALVYIIRLMGSAIGLPDSFPILGAGDWRSYVLPSVILGILSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHIFKNAMVSLVSGIPASIVGVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALSIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=1131199 H1X08_RS03100 WP_164135541.1 601570..603063(+) (amiC) [Streptococcus thermophilus isolate STH_CIRM_961]
ATGAAAAGATACATTTTATTGAGAACCCTCCGTTCTATATTGTCAATATTTGTCGTGACAGCCTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCATCTGATTTTCAGACAGGACCCTAACTACAATAAGATTGCAAAGACAGCTGATTCTAAGA
CAAACTATGAAAATACAATCTTTGAACGTATGGGGTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAATGCCAGC
ACACTTGATAAGTCGGTAACAACTAAGCCAACAAAAGCCAATAAAGCTATCTACCAAAAATATGTGGATAGTTTGGGACA
TGGCTGGCGTTTGCATCAGTTCAAGCAAAGTAAGCAATTCTATGCGACACGTGATGTGCCAGTGCTTGAACGTGTGTTTG
AATTCTACACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTACATC
CGTATTGAAAATGATCCAGCTATTGGTTGGTCAGTTGTTGGTTCAGGAACTAAGCACAAATATTTGCTTTACTTTAACAG
TCAGTTCCCGTTTGTTCACCAAAATTTTGTGAAGATGAATCTTGGAACTTCATACCCAACTTATGCTGGGCAAGGTGTTC
TTGATGTTATTACACAAGGCCAAGGACAGACAAAAAGCTCTGTGGTTAACTTCCCTACTGGTAAGAGAATATCTTCAGTA
GATATCTATTCTCGTACTTATAAATCACCTAGTCAGGCTGACGCCAGAGATCGTTCTTACTATGGTGATGATCCGTACAC
ATCTACTAAGAATCGTTATCAGGACCCATCAATGGTGACAAGCTCTGCCATTGCTGGTTTGATTGGTTTGGTCTTGTCTT
ATGCCTTAGCGATTCCATTGGGATCTTACATGGCACGCTTTAAAAATACACTCTTTGATAGTGTGTTAACAGGTATCCTG
ACTTTCTTGCTTTCTCTACCGACGATTGCCTTGGTATATATCATTCGCTTGATGGGTTCTGCGATTGGTCTTCCGGATTC
TTTTCCTATCTTGGGTGCGGGTGACTGGCGTTCTTATGTCTTGCCATCTGTTATTCTCGGAATCTTGTCAACTCCTGGTC
TTGCGATTTGGATCCGCCGTTACATGATTGATTTGCAATCACAAGACTTCGTTCGTTTTGCACGTGCCAAAGGATTGTCA
GAACAAGAAATTTCAAACAAGCACATTTTCAAGAATGCTATGGTTTCCTTGGTTTCAGGAATTCCAGCATCTATTGTTGG
GGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATCGACTCTGTTCGTG
CTTCTAATAATGCTATGGTCGTTGGTCTGGTATTTATTTTTACAGCCCTCTCCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATTATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

95.171

100

0.952
  amiC Streptococcus thermophilus LMD-9

94.97

100

0.95
  amiC Streptococcus thermophilus LMG 18311

94.97

100

0.95

Multiple sequence alignment