Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   H1X08_RS03115 Genome accession   NZ_LR822025
Coordinates   605077..606003 (+) Length   308 a.a.
NCBI ID   WP_179972088.1    Uniprot ID   A0A7U7C4F3
Organism   Streptococcus thermophilus isolate STH_CIRM_961     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 600077..611003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1X08_RS03100 (STHERMO_0678) amiC 601570..603063 (+) 1494 WP_164135541.1 ABC transporter permease Regulator
  H1X08_RS03105 (STHERMO_0679) amiD 603063..603989 (+) 927 WP_180482512.1 oligopeptide ABC transporter permease OppC Regulator
  H1X08_RS03110 (STHERMO_0680) amiE 603999..605084 (+) 1086 WP_179972089.1 ABC transporter ATP-binding protein Regulator
  H1X08_RS03115 (STHERMO_0681) amiF 605077..606003 (+) 927 WP_179972088.1 ATP-binding cassette domain-containing protein Regulator
  H1X08_RS03120 (STHERMO_0682) - 606056..606841 (-) 786 WP_180482513.1 ABC transporter permease -
  H1X08_RS03125 (STHERMO_0684) - 606853..607553 (-) 701 Protein_588 ABC transporter ATP-binding protein -
  H1X08_RS03130 (STHERMO_0685) - 607558..607935 (-) 378 WP_180482514.1 GntR family transcriptional regulator -
  H1X08_RS03135 (STHERMO_0686) - 608120..608914 (+) 795 WP_180482515.1 HAD-IIB family hydrolase -
  H1X08_RS03140 (STHERMO_0687) - 608907..609722 (+) 816 WP_180482516.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 35038.09 Da        Isoelectric Point: 6.3519

>NTDB_id=1131202 H1X08_RS03115 WP_179972088.1 605077..606003(+) (amiF) [Streptococcus thermophilus isolate STH_CIRM_961]
MPEKLVEVKDLEISFGEGRKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGYLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLYNFHLYKDEEERKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKTEIETYHKEQS

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1131202 H1X08_RS03115 WP_179972088.1 605077..606003(+) (amiF) [Streptococcus thermophilus isolate STH_CIRM_961]
ATGCCTGAGAAATTAGTTGAAGTAAAAGATCTGGAAATTTCCTTCGGCGAAGGAAGAAAGAAGTTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTCTCTCTCGTTGGTGAGTCTGGTAGTGGTAAAACTACTATTGGACGTG
CCATTATTGGTTTAAATGACACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAGATCAATGGATACTTATCTCATTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCGACAGTCGA
TTATATCTTGTCTGAGGGCTTGTACAATTTCCATCTTTATAAAGATGAGGAAGAACGTAAGGCTAAAATCAAGGAAATCA
TCAAAGAAGTAGGACTTCTTGAGGAGCACTTAACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGG
ATTGCGCGTTCTTTGGTCATGCAGCCTGATTTGGTTATCGCTGATGAACCAATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAATTTGCTTAAGAAATTCCAAAAAGAGTTGGGGTTAACCTATCTCTTTATCGCTCACGATTTGTCAGTGG
TCCGTTTCATTTCTGATCGTATCGCTGTTATCTATAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAGCTCTACAAC
AATCCTATTCATCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGATCCAATATTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCGGTTGATAAACCAGAAATGGTGGAAGTACGTCCAGGTCACTTCGTTT
GGGGTAACAAGACAGAAATTGAGACTTATCATAAAGAACAAAGTTAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(26-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7C4F3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

99.351

100

0.994
  amiF Streptococcus thermophilus LMD-9

99.026

100

0.99
  amiF Streptococcus salivarius strain HSISS4

97.403

100

0.974

Multiple sequence alignment