Detailed information NTG1131067

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: H0514_RS00855
• Genome accession: NZ_LR822020
• Coordinates: 150065..150502 (+)
• Length: 145 a.a.
• NCBI ID: WP_179972343.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus isolate STH_CIRM_956
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 145065..155502

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H0514_RS00825 (STHERMO_0166)	-	146739..147101 (+)	363	WP_179972348.1	DUF1033 family protein	-
H0514_RS00830 (STHERMO_0167)	comGA/cglA/cilD	147182..148123 (+)	942	WP_179972347.1	competence type IV pilus ATPase ComGA	Machinery gene
H0514_RS00835 (STHERMO_0168)	comYB	148005..149105 (+)	1101	WP_179973355.1	competence type IV pilus assembly protein ComGB	Machinery gene
H0514_RS00840 (STHERMO_0169)	comYC	149102..149428 (+)	327	WP_179972346.1	competence type IV pilus major pilin ComGC	Machinery gene
H0514_RS00845 (STHERMO_0170)	comGD	149388..149816 (+)	429	WP_269473123.1	competence type IV pilus minor pilin ComGD	-
H0514_RS00850 (STHERMO_0171)	comGE	149788..150081 (+)	294	WP_179972344.1	competence type IV pilus minor pilin ComGE	-
H0514_RS00855 (STHERMO_0172)	comYF	150065..150502 (+)	438	WP_179972343.1	competence type IV pilus minor pilin ComGF	Machinery gene
H0514_RS00860 (STHERMO_0173)	comGG	150480..150791 (+)	312	WP_179972342.1	competence type IV pilus minor pilin ComGG	-
H0514_RS00865 (STHERMO_0174)	comYH	150842..151798 (+)	957	WP_179972341.1	class I SAM-dependent methyltransferase	Machinery gene
H0514_RS00870 (STHERMO_0175)	-	151854..153047 (+)	1194	WP_179972340.1	acetate kinase	-
H0514_RS00875 (STHERMO_0176)	-	153295..153492 (+)	198	WP_179972339.1	helix-turn-helix transcriptional regulator	-
H0514_RS11190 (STHERMO_0177)	-	153504..153945 (+)	442	Protein_129	CAAX protease	-
H0514_RS00880 (STHERMO_0178)	-	154042..154704 (+)	663	WP_179972338.1	CPBP family intramembrane glutamic endopeptidase	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16330.76 Da
• Isoelectric Point: 8.4525

>NTDB_id=1131067 H0514_RS00855 WP_179972343.1 150065..150502(+) (comYF) [Streptococcus thermophilus isolate STH_CIRM_956]
MYLSSNLRAFTLLECLVALLVIAGSVQVYQGLTTVLVSNVKQVRQQENQDWLLFVQQMEAELEGCQLVKVEGNKLYVKQD
NQDLAFGLSSASDFRKTNADGRGYQPMLFDVKSSKVSQKNQIVTIQVTLKNGLQRNFIYAFEKTG

Nucleotide

• Length: 438 bp

>NTDB_id=1131067 H0514_RS00855 WP_179972343.1 150065..150502(+) (comYF) [Streptococcus thermophilus isolate STH_CIRM_956]
ATGTATCTAAGCAGTAATCTGCGTGCCTTTACCCTCTTGGAATGTCTAGTGGCCTTGTTGGTCATTGCTGGCTCAGTTCA
AGTTTATCAAGGGTTAACCACTGTACTTGTGAGTAATGTTAAGCAGGTAAGACAACAAGAAAACCAAGACTGGCTTCTAT
TTGTTCAACAAATGGAGGCAGAATTAGAAGGATGTCAGTTGGTCAAGGTAGAGGGGAATAAACTCTATGTCAAGCAGGAT
AATCAAGACTTGGCTTTTGGTCTTTCAAGTGCCTCTGATTTTCGAAAAACAAATGCTGACGGTCGAGGCTATCAACCAAT
GCTTTTCGATGTCAAATCTAGTAAGGTAAGTCAAAAGAACCAGATAGTTACCATCCAAGTGACTCTTAAAAATGGACTAC
AAAGGAATTTTATTTATGCTTTTGAAAAAACAGGTTAG

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (39-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	57.447	97.241	0.559
comYF	Streptococcus mutans UA159	56.738	97.241	0.552
comGF/cglF	Streptococcus pneumoniae D39	50	96.552	0.483
comGF/cglF	Streptococcus pneumoniae Rx1	50	96.552	0.483
comGF/cglF	Streptococcus pneumoniae R6	50	96.552	0.483
comGF/cglF	Streptococcus pneumoniae TIGR4	50	96.552	0.483
comGF/cglF	Streptococcus mitis NCTC 12261	48.227	97.241	0.469
comGF/cglF	Streptococcus mitis SK321	47.518	97.241	0.462
comGF	Lactococcus lactis subsp. cremoris KW2	46.377	95.172	0.441