Detailed information    

insolico Bioinformatically predicted

Overview

Name   stkP/pknB   Type   Regulator
Locus tag   H0511_RS06640 Genome accession   NZ_LR822017
Coordinates   1301327..1303198 (-) Length   623 a.a.
NCBI ID   WP_179973870.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_336     
Function   activate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1296327..1308198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0511_RS06610 (STHERMO_1484) rimM 1296737..1297255 (-) 519 WP_011226286.1 ribosome maturation factor RimM -
  H0511_RS06625 (STHERMO_1485) - 1297932..1298576 (-) 645 WP_022496266.1 response regulator transcription factor -
  H0511_RS06630 (STHERMO_1486) - 1298566..1299576 (-) 1011 WP_179973869.1 sensor histidine kinase -
  H0511_RS06635 (STHERMO_1487) liaF 1299573..1300271 (-) 699 WP_179972075.1 cell wall-active antibiotics response protein LiaF -
  H0511_RS06640 (STHERMO_1489) stkP/pknB 1301327..1303198 (-) 1872 WP_179973870.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  H0511_RS06645 (STHERMO_1490) - 1303198..1303935 (-) 738 WP_179972077.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  H0511_RS06650 (STHERMO_1491) rsmB 1303979..1305301 (-) 1323 WP_179972078.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  H0511_RS06655 (STHERMO_1492) fmt 1305291..1306226 (-) 936 WP_179973871.1 methionyl-tRNA formyltransferase -

Sequence

Protein


Download         Length: 623 a.a.        Molecular weight: 68031.82 Da        Isoelectric Point: 6.6792

>NTDB_id=1130975 H0511_RS06640 WP_179973870.1 1301327..1303198(-) (stkP/pknB) [Streptococcus thermophilus isolate STH_CIRM_336]
MIQVGKLFAGRYRILKSIGRGGMADVYLANDLILDNENVAIKVLRTNYQTDQVAVARFQREARAMAELSHPNIVAIRDIG
EEDGQQFLVMEYVDGSDLKKFIQDHAPLSNQDVVHIMGEVLSAMTLAHQKGIIHRDLKPQNVLLTKDGRAKVTDFGIAVA
FAETSLTQTNSMLGSVHYLSPEQARGSKATIQSDIYAMGIMLFEMLTGHIPFDGDSAVTIALQHFQKPLPSILAENRNVP
QALENVVIRATAKKLENRYNSTLEMSRDLVTSLYPSHSRDSKVVFDDMTDTKTLPKVDSVPSVGPEKKISPKPSEPKPAP
SKQPREKASLSKKKKKLFSTLLKVFLGFVFIGIIVFAYLVFTNPDNVQVPNVVGQELSTAQTELESAGFKVGDVKEVEND
SVDKGKVIKTDPTAGTTRKEGTSIDVYVSSGSKGFTLKNYTGKNYKDAIEDLTSNYGVSEDQIDIQYIEDDNAKEGEILS
QSPERNKSFNPKDSKAKIKFRVATPKTITMPDVTGLTVSTAVQTLNRKNISSSSIEYRDYNTGVKLDKSKVPSNTGVLYQ
DPQVGTAVDGTVILYVSVVTESSSIQQSSSASTTQSPSSTSSSSESSTASSTETATEATHTEQ

Nucleotide


Download         Length: 1872 bp        

>NTDB_id=1130975 H0511_RS06640 WP_179973870.1 1301327..1303198(-) (stkP/pknB) [Streptococcus thermophilus isolate STH_CIRM_336]
ATGATCCAAGTTGGCAAATTATTTGCTGGACGTTATCGAATCCTTAAATCTATCGGACGTGGTGGTATGGCGGATGTTTA
TCTGGCTAACGACCTGATTCTGGATAATGAAAATGTAGCTATTAAGGTGCTACGTACCAATTATCAAACTGATCAGGTTG
CTGTGGCGCGTTTCCAGCGTGAAGCGCGTGCCATGGCTGAGCTTAGTCATCCGAATATCGTTGCGATTAGAGATATTGGT
GAAGAAGACGGTCAGCAGTTCTTGGTGATGGAGTATGTGGATGGTTCGGACTTGAAGAAATTCATTCAAGACCATGCACC
ATTGTCTAACCAAGATGTTGTGCATATTATGGGGGAAGTCCTTTCCGCCATGACTCTTGCCCACCAAAAGGGTATTATTC
ACCGTGACCTTAAGCCACAGAACGTTCTATTAACTAAGGATGGTAGAGCTAAGGTTACAGACTTTGGTATCGCAGTAGCA
TTTGCTGAAACCAGCCTGACACAAACTAACTCAATGTTGGGGTCAGTCCATTATTTGTCACCAGAACAGGCACGTGGTTC
TAAAGCCACTATCCAAAGTGATATCTATGCTATGGGGATTATGCTCTTTGAAATGTTGACAGGGCATATCCCTTTTGATG
GCGATAGTGCAGTAACCATTGCACTTCAACATTTCCAAAAGCCCCTGCCATCGATTTTGGCTGAGAATCGTAACGTTCCT
CAAGCTTTAGAAAATGTTGTTATTAGAGCAACTGCTAAAAAGCTTGAAAATCGTTACAACAGCACTTTGGAAATGAGTCG
CGACCTAGTAACTAGTTTGTATCCTAGTCATAGTCGTGATTCTAAGGTAGTTTTTGATGACATGACGGATACTAAGACCC
TGCCAAAGGTTGATTCAGTTCCATCAGTAGGTCCGGAGAAAAAGATTTCTCCTAAACCATCAGAGCCTAAACCGGCTCCA
AGCAAACAACCGAGGGAAAAAGCTTCTCTATCTAAAAAGAAGAAAAAGCTCTTTTCAACTCTACTCAAGGTTTTCCTAGG
CTTCGTCTTTATAGGAATTATCGTCTTTGCCTATCTTGTTTTTACCAATCCTGACAATGTCCAAGTACCAAATGTTGTAG
GTCAAGAATTGTCAACAGCTCAGACGGAACTTGAAAGTGCAGGCTTTAAGGTTGGTGATGTTAAAGAAGTCGAAAATGAT
TCAGTCGATAAGGGCAAAGTTATCAAGACCGACCCTACAGCTGGGACAACGCGTAAAGAGGGAACAAGCATTGATGTCTA
TGTTTCTTCTGGTAGCAAAGGTTTCACTCTGAAAAATTACACAGGGAAAAATTATAAGGATGCCATTGAGGATTTGACCT
CAAATTATGGGGTTTCCGAGGATCAGATTGATATTCAATATATCGAAGACGATAATGCTAAAGAAGGCGAAATCCTATCT
CAAAGTCCGGAGAGAAACAAGTCCTTCAATCCTAAAGATAGTAAGGCAAAAATCAAGTTTCGTGTGGCAACTCCTAAGAC
CATAACTATGCCTGATGTGACTGGTTTAACTGTCTCGACAGCAGTCCAAACCTTGAATCGTAAAAACATTTCAAGTAGTA
GTATTGAGTATCGTGACTATAATACTGGTGTTAAGTTGGATAAGAGTAAGGTACCTAGTAATACAGGGGTCCTTTATCAA
GATCCTCAAGTTGGTACTGCTGTTGATGGCACAGTGATTCTCTATGTTTCAGTCGTAACTGAGAGTTCAAGTATTCAACA
GTCAAGCTCAGCAAGTACGACACAATCGCCGTCATCTACAAGTTCTAGTTCTGAAAGTAGTACAGCTTCTAGTACCGAAA
CAGCTACAGAAGCTACTCACACAGAGCAATAA

Domains

Predicted by InterproScan.

Protein kinase domain (Pkinase)

(12-235)

PASTA domain (PASTA)

(367-429)

PASTA domain (PASTA)

(436-502)

PASTA domain (PASTA)

(508-577)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  stkP/pknB Streptococcus salivarius strain HSISS4

90.017

93.258

0.839
  pknB Streptococcus mutans UA159

65.498

86.998

0.57
  stkP Streptococcus pneumoniae TIGR4

58.3

79.294

0.462
  stkP Streptococcus pneumoniae D39

58.097

79.294

0.461
  stkP Streptococcus pneumoniae R6

58.097

79.294

0.461
  stkP Streptococcus pneumoniae Rx1

57.895

79.294

0.459

Multiple sequence alignment