Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   H0502_RS08370 Genome accession   NZ_LR822013
Coordinates   1641057..1642292 (-) Length   411 a.a.
NCBI ID   WP_014608809.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_32     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1636057..1647292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0502_RS08350 (STHERMO_1869) - 1637087..1637278 (-) 192 WP_002886272.1 DUF951 domain-containing protein -
  H0502_RS08355 (STHERMO_1870) dnaN 1637329..1638465 (-) 1137 WP_011680575.1 DNA polymerase III subunit beta -
  H0502_RS08360 (STHERMO_1871) dnaA 1638620..1639984 (-) 1365 WP_002948584.1 chromosomal replication initiator protein DnaA -
  H0502_RS08365 (STHERMO_1872) spo0J 1640224..1640991 (-) 768 WP_002952299.1 ParB/RepB/Spo0J family partition protein Regulator
  H0502_RS08370 (STHERMO_1873) htrA 1641057..1642292 (-) 1236 WP_014608809.1 S1C family serine protease Regulator
  H0502_RS08375 (STHERMO_1874) rlmH 1642497..1642976 (+) 480 WP_002952297.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  H0502_RS08380 (STHERMO_1875) - 1642992..1643675 (+) 684 WP_011226711.1 YoaK family protein -
  H0502_RS08400 (STHERMO_1876) - 1644218..1646824 (-) 2607 WP_041827400.1 YfhO family protein -

Sequence


Protein


Download         Length: 411 a.a.        Molecular weight: 42915.25 Da        Isoelectric Point: 4.7061

>NTDB_id=1130812 H0502_RS08370 WP_014608809.1 1641057..1642292(-) (htrA) [Streptococcus thermophilus isolate STH_CIRM_32]
MKKFNWKKIVVPIAMLIIGLLGGLLGAFILLTAAGVSFTNTTDTGVKTVKTVYTNITDTTKAVKKVQNAVVSVINYQEGS
SSDSLNDLYGRIFGGGDSSDSSQENSKDSDGLQVAGEGSGVIYKKDGKEAYIVTNNHVVDGAKKLEIMLSDGSKITGELV
GKDTYSDLAVVKVSSDKITTVAEFADSNSLTVGEKAIAIGSPLGTEYANSVTEGIVSSLSRTITMQNDNGETVSTNAIQT
DAAINPGNSGGALVNIEGQVIGINSSKISSTSAVAGSAVEGMGFAIPSNDVVEIINQLEKDGKVTRPALGISIADLNSLS
SSATSKLDLPDEVKSGVVVGSVQKGMPADGKLQEYDVITEIDGKKISSKTDIQTNLYSHSIGDTIKVTFYRGKDKKTVDL
KLTKSTEDISD

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=1130812 H0502_RS08370 WP_014608809.1 1641057..1642292(-) (htrA) [Streptococcus thermophilus isolate STH_CIRM_32]
ATGAAAAAATTTAACTGGAAGAAAATAGTCGTGCCAATTGCAATGCTAATTATTGGCTTACTAGGTGGTTTACTTGGTGC
CTTTATCCTACTAACAGCAGCCGGGGTATCTTTTACCAATACAACAGATACTGGAGTAAAAACGGTTAAGACCGTCTACA
CCAATATAACAGATACAACTAAGGCTGTTAAGAAAGTACAAAATGCCGTTGTTTCTGTCATCAATTATCAAGAAGGTTCA
TCTTCAGATTCTCTAAATGACCTTTATGGCCGTATCTTTGGCGGAGGGGACAGTTCTGATTCTAGCCAAGAAAATTCAAA
AGATTCAGATGGTCTGCAGGTCGCTGGTGAAGGTTCTGGAGTCATCTATAAAAAAGATGGCAAAGAAGCCTACATCGTAA
CCAATAACCACGTTGTCGATGGGGCTAAAAAACTCGAAATCATGCTTTCGGATGGTTCGAAAATTACTGGTGAACTTGTT
GGTAAAGACACTTACTCTGACCTAGCAGTTGTCAAAGTATCTTCAGATAAAATAACAACTGTTGCAGAATTTGCAGACTC
AAACTCCCTTACTGTTGGTGAAAAAGCAATTGCTATTGGTAGCCCACTTGGTACCGAATACGCCAACTCAGTAACAGAAG
GAATCGTTTCTAGCCTTAGCCGTACTATAACGATGCAAAACGATAATGGTGAAACTGTATCAACAAACGCTATCCAAACA
GATGCAGCCATTAACCCTGGTAACTCTGGTGGTGCCCTAGTCAATATTGAAGGACAAGTTATCGGTATTAACTCAAGTAA
AATTTCATCAACGTCTGCAGTCGCTGGTAGTGCTGTTGAAGGTATGGGGTTTGCCATTCCATCAAACGATGTTGTTGAAA
TCATCAATCAATTAGAAAAAGATGGTAAAGTTACACGACCAGCACTAGGGATCTCAATAGCAGATCTTAATAGCCTTTCT
AGCAGCGCAACTTCTAAATTAGATTTACCAGATGAGGTCAAATCCGGTGTTGTTGTCGGTAGTGTTCAGAAAGGTATGCC
AGCTGACGGTAAACTTCAAGAATATGATGTTATCACTGAGATTGATGGTAAGAAAATCAGCTCAAAAACTGATATTCAAA
CCAATCTTTACAGCCATAGTATCGGAGATACTATCAAGGTAACCTTCTATCGTGGTAAAGATAAGAAAACTGTAGATCTT
AAATTAACAAAATCTACAGAAGACATATCTGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

60.097

100

0.601

  htrA Streptococcus gordonii str. Challis substr. CH1

57.389

98.783

0.567

  htrA Streptococcus mitis NCTC 12261

53.79

99.513

0.535

  htrA Streptococcus pneumoniae TIGR4

53.545

99.513

0.533

  htrA Streptococcus pneumoniae D39

53.545

99.513

0.533

  htrA Streptococcus pneumoniae Rx1

53.545

99.513

0.533

  htrA Streptococcus pneumoniae R6

53.545

99.513

0.533


Multiple sequence alignment