Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   H0502_RS08365 Genome accession   NZ_LR822013
Coordinates   1640224..1640991 (-) Length   255 a.a.
NCBI ID   WP_002952299.1    Uniprot ID   A0AAN2DBC4
Organism   Streptococcus thermophilus isolate STH_CIRM_32     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1635224..1645991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0502_RS08345 (STHERMO_1868) ychF 1635759..1636874 (-) 1116 WP_011680576.1 redox-regulated ATPase YchF -
  H0502_RS08350 (STHERMO_1869) - 1637087..1637278 (-) 192 WP_002886272.1 DUF951 domain-containing protein -
  H0502_RS08355 (STHERMO_1870) dnaN 1637329..1638465 (-) 1137 WP_011680575.1 DNA polymerase III subunit beta -
  H0502_RS08360 (STHERMO_1871) dnaA 1638620..1639984 (-) 1365 WP_002948584.1 chromosomal replication initiator protein DnaA -
  H0502_RS08365 (STHERMO_1872) spo0J 1640224..1640991 (-) 768 WP_002952299.1 ParB/RepB/Spo0J family partition protein Regulator
  H0502_RS08370 (STHERMO_1873) htrA 1641057..1642292 (-) 1236 WP_014608809.1 S1C family serine protease Regulator
  H0502_RS08375 (STHERMO_1874) rlmH 1642497..1642976 (+) 480 WP_002952297.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  H0502_RS08380 (STHERMO_1875) - 1642992..1643675 (+) 684 WP_011226711.1 YoaK family protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29447.81 Da        Isoelectric Point: 9.6649

>NTDB_id=1130811 H0502_RS08365 WP_002952299.1 1640224..1640991(-) (spo0J) [Streptococcus thermophilus isolate STH_CIRM_32]
MSEQLKTLSISEIYPNPFQPRLKFSDEELVELSQSISENGLIQPIIVRKSDIIGYELIAGERRLRACKRLGMTEIPAVVK
EVTDQESRKQAIIENLQRSNLNPIEEAKAYRNLIDELTYSHEELAKAMGKSRPYISNALRLLQLPREIQTSIENGSLSQG
HARALLAIEDSRKQLTIFQQVVAERWSVRTLEKKLQELPRKQKSKKDTHVKDKEKELERSLGLPITLRYHKNHSGTIQIH
FSTEEDFNRIINKLI

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1130811 H0502_RS08365 WP_002952299.1 1640224..1640991(-) (spo0J) [Streptococcus thermophilus isolate STH_CIRM_32]
ATGTCAGAACAACTCAAAACTTTATCTATTAGTGAAATTTACCCCAATCCTTTTCAACCTCGTCTAAAATTCTCCGATGA
AGAGTTAGTAGAACTAAGTCAATCAATATCAGAAAATGGTTTAATACAGCCAATTATTGTACGAAAATCTGACATTATTG
GTTATGAACTAATTGCTGGAGAAAGACGTTTACGAGCCTGTAAACGTTTAGGGATGACAGAAATCCCTGCAGTTGTAAAG
GAAGTTACAGATCAAGAGAGTCGTAAACAAGCTATTATTGAAAATCTACAACGATCAAATCTCAATCCTATTGAAGAAGC
AAAGGCCTATCGTAATTTAATTGATGAGTTAACTTATAGTCACGAGGAGCTCGCTAAAGCTATGGGAAAATCTAGACCAT
ATATTAGTAACGCTCTTAGACTACTACAACTTCCGCGAGAGATACAAACGAGTATTGAAAACGGAAGTCTGAGTCAGGGA
CATGCTAGAGCACTCTTAGCTATTGAGGATTCTCGAAAGCAGTTAACCATCTTTCAGCAGGTTGTGGCTGAAAGATGGTC
TGTTCGTACTCTAGAAAAAAAACTTCAGGAACTTCCTAGAAAACAAAAATCTAAAAAAGATACCCATGTAAAAGATAAAG
AAAAAGAACTTGAAAGATCACTAGGTCTCCCCATAACTCTACGTTATCACAAAAATCACTCAGGAACGATTCAAATACAC
TTTTCGACAGAAGAAGATTTTAACAGAATTATCAACAAGCTTATCTAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(8-95)

HTH domain found in ParB protein (HTH_ParB)

(147-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

56.863

100

0.569

Multiple sequence alignment